Browse Element(s) Details


OsAffx.22775.1.S1_at

Description gb:NM_184383.1
DB_XREF= gi:34895855
GEN=P0009G03.7
TID=OsAffx.22775.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0009G03.7 (P0009G03.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g057208/11protein tyrosine phosphatase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05660Os.523.1.S1_at11/111+2695736..2700293expressed protein
LOC_Os01g05670Os.6202.1.S1_a_at11/111+2704304..27082273-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g05680Os.12757.3.S1_at11/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.12757.4.S1_x_at9/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.23850.1.A1_at1/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05694Os.12757.1.S1_a_at11/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05694Os.12757.4.S1_x_at1/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05710OsAffx.22776.2.S1_at10/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.23126.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.22776.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05720OsAffx.22775.1.S1_at8/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05720OsAffx.23126.1.S1_at1/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05730Os.35216.2.S1_x_at11/111+2732311..2734632retrotransposon protein, putative, unclassified
LOC_Os01g05744Os.34163.1.S1_at11/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.38043.1.S1_x_at2/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744OsAffx.10820.1.S1_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.532.1.S1_s_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05760Os.38043.1.S1_x_at1/111+2749020..2749814protein tyrosine phosphatase, putative
LOC_Os01g05770OsAffx.28023.2.S1_s_at11/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.1.S1_at10/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.2.S1_at2/111+2750592..2753880expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
GO:0004725molecular_functionprotein tyrosine phosphatase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22775.1.S1_at--871--7151Chr01:2725327..2725351 (25 bp)
GTCTATGCTGCCATCGAGCGACCTC
LOC_Os01g05720
OsAffx.22775.1.S1_at--195--5891Chr01:2725342..2725366 (25 bp)
GAGCGACCTCTGCTGTTCACGCAGA
LOC_Os01g05720
OsAffx.22775.1.S1_at--955--1391Chr01:2725364..2725388 (25 bp)
AGACTGCTGCCATCTTGGAGGTCCT
LOC_Os01g05720
OsAffx.22775.1.S1_at--131--8551Chr01:2725379..2725516 (25 bp)
TGGAGGTCCTGATTCTTCATTCCAT
LOC_Os01g05720
OsAffx.22775.1.S1_at--98--3651NONE
CTTCCCTGAGACACAGTCTTATATT
NONE
OsAffx.22775.1.S1_at--921--10291Chr01:2727328..2727352 (25 bp)
TTTCCTGTTGGTGTGGTTAGTGAGA
LOC_Os01g05720
OsAffx.22775.1.S1_at--214--6791Chr01:2727343..2727367 (25 bp)
GTTAGTGAGATTTGCCTAGCCTACA
LOC_Os01g05720
OsAffx.22775.1.S1_at--608--9991Chr01:2727359..2727383 (25 bp)
TAGCCTACACTGTTCTTCCTTTCAT
LOC_Os01g05720
OsAffx.22775.1.S1_at--1092--10351Chr01:2727553..2727577 (25 bp)
TTTTCATGGCTTTTTATGTCCCAGG
LOC_Os01g05720
OsAffx.22775.1.S1_at--888--751Chr01:2727568..2728016 (25 bp)
ATGTCCCAGGAAAGATGCATCCCCT
NONE
OsAffx.22775.1.S1_at--124--5332Chr01:2728024..2728048 (25 bp)
GAAGTGGACCTCGAGGCTTTCACAA
NONE
Target Sequence
GTCTATGCTGCCATCGAGCGACCTCTGCTGTTCACGCAGACTGCTGCCATCTTGGAGGTCCTGATTCTTCATTCCATTGT
AGGGTTGGTGAGGTCTCCAGTGTCTTCTACTCTCCCACAAATTACTGGAAGGTTGTTCATTACCTGGGGCATCTTGTGGA
GCTTCCCTGAGACACAGTCTTATATTTTTGTTACCTCCTTGCTCATATGCTGGTGCATCATTGAGGTTACCAGATATTCT
TTCTATGGCATGAAGGAGTCATTTGGATTTACACCTTCCTGGCTCTTATGGCTTAGGTACAGCACCTTCATAGCATGCTT
TCCTGTTGGTGTGGTTAGTGAGATTTGCCTAGCCTACACTGTTCTTCCTTTCATGAAGGCGTCTGAGAAATACTGCCTTA
GGATGCCCAACAAATGGAATTTCTCCTTCAACTACTTCTATGCCAATGTCTTTTTCATGGCTTTTTATGTCCCAGGAAAG
ATGCATCCCCTCCTCAATGAAGTGGACCTCGAGGCTTTCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis