Browse Element(s) Details


Os.12757.4.S1_x_at

Description gb:NM_184380.1
DB_XREF= gi:34895849
GEN=P0009G03.4
TID=Os.12757.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12757 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative geranylgeranyl-diphosphate geranylgeranyltransferase I beta chain (P0009G03.4), mRNA.
PROD=putative geranylgeranyl-diphosphategeranylgeranyltransferase I beta chain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g056809/11Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g056941/11protein tyrosine phosphatase, putative, expressed
LOC_Os04g202801/11protein tyrosine phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05640OsAffx.22770.3.S1_x_at11/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.1.S1_x_at2/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.4.S1_at1/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05650Os.46398.1.S1_s_at9/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.5523.1.S1_x_at5/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_x_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05660Os.523.1.S1_at11/111+2695736..2700293expressed protein
LOC_Os01g05670Os.6202.1.S1_a_at11/111+2704304..27082273-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g05680Os.12757.3.S1_at11/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.12757.4.S1_x_at9/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.23850.1.A1_at1/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05694Os.12757.1.S1_a_at11/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05694Os.12757.4.S1_x_at1/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05710OsAffx.22776.2.S1_at10/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.23126.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.22776.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05720OsAffx.22775.1.S1_at8/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05720OsAffx.23126.1.S1_at1/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05730Os.35216.2.S1_x_at11/111+2732311..2734632retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0018344biological_processprotein geranylgeranylation
GO:0030154biological_processcell differentiation
GO:0005953cellular_componentCAAX-protein geranylgeranyltransferase complex
GO:0004662molecular_functionCAAX-protein geranylgeranyltransferase activity
GO:0004725molecular_functionprotein tyrosine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12757.4.S1_x_at--266--11Chr01:2711809..2711833 (25 bp)
AGGACCCTTGCCACAATGGTAGTCA
LOC_Os01g05680
Os.12757.4.S1_x_at--533--111Chr01:2711848..2711872 (25 bp)
ATTCTGCCCTTGCTATCCTGAAGAT
LOC_Os01g05680
Os.12757.4.S1_x_at--660--3211Chr01:2711903..2711927 (25 bp)
CAAGGTTCTTTTGTCCTCAATGAGA
LOC_Os01g05680
Os.12757.4.S1_x_at--61--691Chr01:2711922..2711946 (25 bp)
ATGAGAAACCTCCAACAGCCAGATG
LOC_Os01g05680
Os.12757.4.S1_x_at--1112--5391Chr01:2712490..2712512 (23 bp)
GAAGCTTCATGCCTACTCATATTGG
LOC_Os01g05680
Os.12757.4.S1_x_at--1--5851Chr01:2712523..2712547 (25 bp)
GACCTACGCTTTGTATACTGTGCAG
LOC_Os01g05680
Os.12757.4.S1_x_at--694--3391Chr01:2712631..2712655 (25 bp)
CAGCTGCAATCTGCTCGATGCTAAA
LOC_Os01g05680
Os.12757.4.S1_x_at--858--9871Chr01:2712693..2712815 (25 bp)
TACATTCTTAGTTGCCAGTCATACG
LOC_Os01g05680
Os.12757.4.S1_x_at--2--8471Chr01:2712826..2712850 (25 bp)
TGGCTTGGTTCCTGGTTCAGAATCT
LOC_Os01g05680
Os.12757.4.S1_x_at--758--10511NONE
TTCAGAATCTCATGGCCTCGCGTTC
NONE
Os.12757.4.S1_x_at--974--1032Chr04:11311542..11311566 (25 bp)
AGGTGCTGTACTACGCGGTCACGAC
LOC_Os04g20280
Target Sequence 
AGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTA
GCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGCTTCATGCCTACTCATAT
TGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACA
AGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCAT
GGCCTCGCGTTCCTCGGTTCCTCCTCCTCCTTGCTAGCTGCTGCTGAGTGCTCGGCGATGACGGGCGTCGGGTCGGCGGT
GCGGCGGCTCTACCTCTCCGTCTACAACTGGGCCGTCTTCTTCGGATGGGCGCAGGTGCTGTACTACGCGGTCACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12757.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis