Browse Element(s) Details


Os.35005.1.S1_x_at

Description gb:AK069318.1
DB_XREF= gi:32979342
TID=Os.35005.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35005 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434B04.24 (P0434B04.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014M14, full insert sequence.
FL= gb:AK069318.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g056502/11Metallothionein-like protein type 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05600Os.33469.1.S2_at3/111+2666754..2669726NBS-LRR disease resistance protein, putative
LOC_Os01g05610Os.19803.4.S1_at10/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05610OsAffx.10929.1.S1_x_at7/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05620Os.33469.1.S2_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05620Os.33469.1.S1_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05630Os.19803.4.S1_at9/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05630OsAffx.10929.1.S1_x_at7/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05640OsAffx.22770.3.S1_x_at11/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.1.S1_x_at2/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.4.S1_at1/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05650Os.46398.1.S1_s_at9/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.5523.1.S1_x_at5/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_x_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05660Os.523.1.S1_at11/111+2695736..2700293expressed protein
LOC_Os01g05670Os.6202.1.S1_a_at11/111+2704304..27082273-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g05680Os.12757.3.S1_at11/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.12757.4.S1_x_at9/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.23850.1.A1_at1/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05694Os.12757.1.S1_a_at11/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05694Os.12757.4.S1_x_at1/111+2714638..2718005protein tyrosine phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35005.1.S1_x_at--1078--6411Chr01:2662347..2662371 (25 bp)
GATCTATGGTTGGTTAATTCTCTGA
NONE
Os.35005.1.S1_x_at--723--112Chr01:2690430..2690454 (25 bp)
ATTCTCTGATGGATGCAGTCATGCC
LOC_Os01g05650
Os.35005.1.S1_x_at--416--831Chr01:2662323..2662347 (25 bp)
ATGGATGCAGTCATGCCGAAGGGTT
NONE
Os.35005.1.S1_x_at--115--1812Chr01:2662230..2662254 (25 bp)
ACCCCTGCAACTGCGGCAAGTTGAA
NONE
Os.35005.1.S1_x_at--519--10752Chr01:2662210..2662234 (25 bp)
TTGAAGCAAGCAACCTCCTGATCAG
NONE
Os.35005.1.S1_x_at--792--10671Chr01:2662095..2662119 (25 bp)
TTCCTCTGTGAGTTTGTGATCTAAG
NONE
Os.35005.1.S1_x_at--1042--10251Chr01:2662017..2662041 (25 bp)
TTTGAGACATCTATGGCGTCTGTAC
NONE
Os.35005.1.S1_x_at--36--4651Chr01:2662002..2662026 (25 bp)
GCGTCTGTACGATGATAGTCCTTCC
NONE
Os.35005.1.S1_x_at--473--10671NONE
TTCCTCTCCAGTCTTATGGTGTGTA
NONE
Os.35005.1.S1_x_at--383--5271Chr01:2661947..2661971 (25 bp)
GAATGCAATGCTGTGTGTCATGTAT
NONE
Os.35005.1.S1_x_at--641--7452Chr01:2661933..2661957 (25 bp)
GTGTCATGTATGCTTTCTATCTAGT
NONE
Target Sequence 
GATCTATGGTTGGTTAATTCTCTGATGGATGCAGTCATGCCGAAGGGTTGGAGGCCGGCGCCGCCGCCGGAGCAGGAGCA
GAGAACGGGTGCAAGTGCGGCGACAACTGCACCTGCAACCCCTGCAACTGCGGCAAGTTGAAGCAAGCAACCTCCTGATC
AGGAAACCAAGGAGATGGAAGGACCTAGTACTGCTAATCTAGTAGTATGATCCAGTTACGAGTGATGAGTTGTTGTCACT
GTAACTTTGTGTTTCCTCTGTGAGTTTGTGATCTAAGACCTGAGACTGAAGAAATGCATCCTAGTTAATAAGTGCTAAGA
ATAAAGATGTTTTGAGACATCTATGGCGTCTGTACGATGATAGTCCTTCCTCTCCAGTCTTATGGTGTGTACGTAATTAA
GAATGCAATGCTGTGTGTCATGTATGCTTTCTATCTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35005.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis