Browse Element(s) Details


Os.33469.1.S1_at

Description gb:AK100477.1
DB_XREF= gi:32985686
TID=Os.33469.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative resistance gene analog PIC23 (P0434B04.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023094O16, full insert sequence.
FL= gb:AK100477.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0562011/11NBS-LRR disease resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05570Os.6138.2.S1_at8/111+2657624..2658103hypothetical protein
LOC_Os01g05580OsAffx.26236.1.S1_at3/111+2660341..2660874expressed protein
LOC_Os01g05590Os.35005.2.S1_at11/111+2663306..2664587retrotransposon protein, putative, LINE subclass
LOC_Os01g05600Os.33469.1.S2_at3/111+2666754..2669726NBS-LRR disease resistance protein, putative
LOC_Os01g05610Os.19803.4.S1_at10/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05610OsAffx.10929.1.S1_x_at7/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05620Os.33469.1.S2_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05620Os.33469.1.S1_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05630Os.19803.4.S1_at9/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05630OsAffx.10929.1.S1_x_at7/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05640OsAffx.22770.3.S1_x_at11/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.1.S1_x_at2/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.4.S1_at1/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05650Os.46398.1.S1_s_at9/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.5523.1.S1_x_at5/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_x_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05660Os.523.1.S1_at11/111+2695736..2700293expressed protein
LOC_Os01g05670Os.6202.1.S1_a_at11/111+2704304..27082273-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33469.1.S1_at--263--10071Chr01:2680574..2680598 (25 bp)
TAGGAGGCCCTCTGTACTTAAGCTA
LOC_Os01g05620
Os.33469.1.S1_at--872--2451Chr01:2680526..2680550 (25 bp)
AACAATGCTTTCTCTGGTGTGCTTT
LOC_Os01g05620
Os.33469.1.S1_at--364--7471Chr01:2680510..2680534 (25 bp)
GTGTGCTTTGTTGCCGTCAAATTTT
LOC_Os01g05620
Os.33469.1.S1_at--1097--6471Chr01:2680483..2680507 (25 bp)
GATACGTCGTGATGCTGTCGCTTAC
LOC_Os01g05620
Os.33469.1.S1_at--839--9031Chr01:2680361..2680385 (25 bp)
TGCAGCCACGACCAGAGTTTGTAGA
LOC_Os01g05620
Os.33469.1.S1_at--1109--7951Chr01:2680279..2680303 (25 bp)
GGATCACTCCATATTCATGAACATG
LOC_Os01g05620
Os.33469.1.S1_at--811--1471Chr01:2680248..2680272 (25 bp)
AGCAAAGCCTTACCAAATCTACGCC
LOC_Os01g05620
Os.33469.1.S1_at--113--6191Chr01:2680165..2680189 (25 bp)
GAGGAGCCTCCTAGTTTTTGATAAC
LOC_Os01g05620
Os.33469.1.S1_at--511--5971Chr01:2680106..2680130 (25 bp)
GAGAACTCAAGCATATCCGTGTCTT
LOC_Os01g05620
Os.33469.1.S1_at--256--251Chr01:2680094..2680118 (25 bp)
ATATCCGTGTCTTAGTTCTCAGTGG
LOC_Os01g05620
Os.33469.1.S1_at--58--2531Chr01:2680035..2680059 (25 bp)
AACTTCTTGTTACTGAGGCTTCTAG
LOC_Os01g05620
Target Sequence 
TAGGAGGCCCTCTGTACTTAAGCTACAGCAACTTACCCCCTGAACTTAAACAATGCTTTCTCTGGTGTGCTTTGTTGCCG
TCAAATTTTGTGATACGTCGTGATGCTGTCGCTTACTGGTGGGTTGCTGAAGGTTTCGTGACGGAAGTGCATGGGTACTC
AATACATGAGGTTGCTGAAGAGTACTACCATGAGCTAATCAGAAGGAATCTTCTGCAGCCACGACCAGAGTTTGTAGACA
AAGGCGAGTCAACAATGCATGATCTATTGAGGTCACTTGGTCAATTTTTGACAAAGGATCACTCCATATTCATGAACATG
GAATATAGCAAAGCCTTACCAAATCTACGCCACTTANGTATCAGCAATGATGTAGAAGAAATACCTGCTATAGAAAAGCA
AAAGTGCTTGAGGAGCCTCCTAGTTTTTGATAACAAAAACTTCATGAAAATTAATAAGGACATTTTCAGAGAACTCAAGC
ATATCCGTGTCTTAGTTCTCAGTGGAACAAGCATCCAAATCATACCAGAGTCAGTGGGAAACTTCTTGTTACTGAGGCTT
CTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis