Browse Element(s) Details


Os.33469.1.S2_at

Description gb:NM_184373.1
DB_XREF= gi:34895835
GEN=P0434B04.28
TID=Os.33469.1
CNT=2
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.33469 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative resistance gene analog PIC23 (P0434B04.28), mRNA.
PROD=putative resistance gene analog PIC23
FL= gb:AK100477.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0562011/11NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g056003/11NBS-LRR disease resistance protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05570Os.6138.2.S1_at8/111+2657624..2658103hypothetical protein
LOC_Os01g05580OsAffx.26236.1.S1_at3/111+2660341..2660874expressed protein
LOC_Os01g05590Os.35005.2.S1_at11/111+2663306..2664587retrotransposon protein, putative, LINE subclass
LOC_Os01g05600Os.33469.1.S2_at3/111+2666754..2669726NBS-LRR disease resistance protein, putative
LOC_Os01g05610Os.19803.4.S1_at10/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05610OsAffx.10929.1.S1_x_at7/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05620Os.33469.1.S2_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05620Os.33469.1.S1_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05630Os.19803.4.S1_at9/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05630OsAffx.10929.1.S1_x_at7/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05640OsAffx.22770.3.S1_x_at11/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.1.S1_x_at2/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.4.S1_at1/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05650Os.46398.1.S1_s_at9/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.5523.1.S1_x_at5/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_x_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05660Os.523.1.S1_at11/111+2695736..2700293expressed protein
LOC_Os01g05670Os.6202.1.S1_a_at11/111+2704304..27082273-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33469.1.S2_at--18--5511Chr01:2679216..2679240 (25 bp)
GAACAGCTTGTTCTGATGCCTTGCC
LOC_Os01g05620
Os.33469.1.S2_at--29--591Chr01:2679201..2679225 (25 bp)
ATGCCTTGCCTTAAGCGTTTGTTTC
LOC_Os01g05620
Os.33469.1.S2_at--572--4631Chr01:2679187..2679211 (25 bp)
GCGTTTGTTTCTTAACGACTGCCCA
LOC_Os01g05620
Os.33469.1.S2_at--27--2892Chr01:2679157..2679181 (25 bp)
AAGGGCTCTCCCTGAAGACTTGCAT
LOC_Os01g05620
Os.33469.1.S2_at--768--252Chr01:2679107..2679131 (25 bp)
ATATCGAAGGTGCTCACACGCTGCA
LOC_Os01g05620
Os.33469.1.S2_at--7--1752Chr01:2679071..2679095 (25 bp)
ACCTTCCTTCAGTGTTATGGCTCAA
LOC_Os01g05620
Os.33469.1.S2_at--277--5691Chr01:2678994..2679018 (25 bp)
GACTTGCTTGCGCAGGACTGTCCAG
LOC_Os01g05620
Os.33469.1.S2_at--751--1931Chr01:2678978..2679002 (25 bp)
ACTGTCCAGCGCTGTATCAGGCAGA
LOC_Os01g05620
Os.33469.1.S2_at--647--5711Chr01:2678933..2678957 (25 bp)
GACTCTACATGGTCGATTGCCACAA
LOC_Os01g05620
Os.33469.1.S2_at--734--7991Chr01:2678894..2678918 (25 bp)
GGATGAGCCTCCTGGAAGACCAACA
LOC_Os01g05620
Os.33469.1.S2_at--208--3271Chr01:2678871..2678895 (25 bp)
CAACTTGCCGTCCATGTTGTTACAG
LOC_Os01g05620
Target Sequence 
GAACAGCTTGTTCTGATGCCTTGCCTTAAGCGTTTGTTTCTTAACGACTGCCCAAAACTAAGGGCTCTCCCTGAAGACTT
GCATAGGATTGCTAACTTAAGAAGAATCCATATCGAAGGTGCTCACACGCTGCAAGAAGTTGACAACCTTCCTTCAGTGT
TATGGCTCAAGGTCAAGAACAACAGGTGTTTGAGGAGAATTTCCAATCTCTGTAATCTAAAGGACTTGCTTGCGCAGGAC
TGTCCAGCGCTGTATCAGGCAGAGAATCTAATCTCACTAAAGAGACTCTACATGGTCGATTGCCACAACGCGAAGCAATT
CAGGATGAGCCTCCTGGAAGACCAACAACTTGCCGTCCATGTTGTTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33469.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis