Browse Element(s) Details


Os.5523.1.S1_x_at

Description gb:CB096951
DB_XREF= gi:27921143
DB_XREF=AF53-Rpf_10_L09_T7_045.ab1
CLONE=C0003729
TID=Os.5523.1
CNT=52
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5523 (NCBI UniGene Cluster)
UG_TITLE=Partial mRNA for putative metallothionein-like protein (xd15 gene)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g056505/11Metallothionein-like protein type 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05600Os.33469.1.S2_at3/111+2666754..2669726NBS-LRR disease resistance protein, putative
LOC_Os01g05610Os.19803.4.S1_at10/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05610OsAffx.10929.1.S1_x_at7/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05620Os.33469.1.S2_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05620Os.33469.1.S1_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05630Os.19803.4.S1_at9/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05630OsAffx.10929.1.S1_x_at7/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05640OsAffx.22770.3.S1_x_at11/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.1.S1_x_at2/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.4.S1_at1/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05650Os.46398.1.S1_s_at9/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.5523.1.S1_x_at5/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_x_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05660Os.523.1.S1_at11/111+2695736..2700293expressed protein
LOC_Os01g05670Os.6202.1.S1_a_at11/111+2704304..27082273-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g05680Os.12757.3.S1_at11/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.12757.4.S1_x_at9/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.23850.1.A1_at1/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05694Os.12757.1.S1_a_at11/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05694Os.12757.4.S1_x_at1/111+2714638..2718005protein tyrosine phosphatase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5523.1.S1_x_at--451--6171Chr01:2691105..2691126 (22 bp)
GAGGATGCAAGATGTACCCGGAGAT
LOC_Os01g05650
Os.5523.1.S1_x_at--775--851Chr01:2691082..2691106 (25 bp)
ATGGCTGAGGAGGTGACCACTACCC
LOC_Os01g05650
Os.5523.1.S1_x_at--662--1711Chr01:2691067..2691091 (25 bp)
ACCACTACCCAGACTGTCATCATGG
LOC_Os01g05650
Os.5523.1.S1_x_at--179--9612Chr01:2691051..2691075 (25 bp)
TCATCATGGGTGTTGCACCTTCCAA
LOC_Os01g05650
Os.5523.1.S1_x_at--278--3371NONE
CACCTTCCAAGGGTCATGCCGAGGG
NONE
Os.5523.1.S1_x_at--615--1132Chr01:2690353..2690377 (25 bp)
AGTGCGGCGACAACTGCACCTGCAA
LOC_Os01g05650
Os.5523.1.S1_x_at--259--6811Chr01:2690123..2690147 (25 bp)
GTTTTGAGACATCTATGGCGTGTGT
NONE
Os.5523.1.S1_x_at--219--451Chr01:2690113..2690137 (25 bp)
ATCTATGGCGTGTGTACGATGATGT
NONE
Os.5523.1.S1_x_at--474--10672Chr01:2690083..2690107 (25 bp)
TTCCTCTCCAGTCTTGTGGTGTGTA
NONE
Os.5523.1.S1_x_at--568--4352Chr01:2690076..2690100 (25 bp)
CCAGTCTTGTGGTGTGTACGTAATT
NONE
Os.5523.1.S1_x_at--40--4011Chr01:2690058..2690082 (25 bp)
CGTAATTAAGAATGCAGTGCTGTGT
NONE
Target Sequence 
GAGGATGCAAGATGTACCCGGAGATGGCTGAGGAGGTGACCACTACCCAGACTGTCATCATGGGTGTTGCACCTTCCAAG
GGTCATGCCGAGGGGTTGGAGGCCGGCGCCGCCGCCGGAGCAGGAGCAGAGAACGGGTGCAAGTGCGGCGACAACTGCAC
CTGCAACCCCTGCAACTGCGGCAAGTGAAGCAAGCAACCTCCTGACGAAACCAAGGAGATGGAAGGGCCTAGTACTGCTA
AGCTAGTAGTTTGATCCAGTTACAAGTGATGAGTTNTTGTCACTGTAACTTTGTGTTTCCTCTGAGTTTGTGATCTAAGA
CCTGAGACTGAAGAAATGCATCCTAGTTAAATAAGTGCTAAGAATAAAGATGTTTTGAGACATCTATGGCGTGTGTACGA
TGATGTAGTCCTTCCTCTCCAGTCTTGTGGTGTGTACGTAATTAAGAATGCAGTGCTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5523.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis