Browse Element(s) Details

Os.523.1.S1_at

Description

gb:AK066489.1
DB_XREF= gi:32976507
TID=Os.523.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.523 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434B04.32 (P0434B04.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069K12, full insert sequence.
FL= gb:AK066489.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g05660	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g05610	Os.19803.4.S1_at	10/11	1	+	2671203..2672174	Histone H2B.2, putative, expressed
LOC_Os01g05610	OsAffx.10929.1.S1_x_at	7/11	1	+	2671203..2672174	Histone H2B.2, putative, expressed
LOC_Os01g05620	Os.33469.1.S2_at	11/11	1	+	2678821..2683166	NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05620	Os.33469.1.S1_at	11/11	1	+	2678821..2683166	NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05630	Os.19803.4.S1_at	9/11	1	+	2683531..2684499	Histone H2B.2, putative, expressed
LOC_Os01g05630	OsAffx.10929.1.S1_x_at	7/11	1	+	2683531..2684499	Histone H2B.2, putative, expressed
LOC_Os01g05640	OsAffx.22770.3.S1_x_at	11/11	1	+	2685425..2688744	Leucine Rich Repeat family protein
LOC_Os01g05640	OsAffx.22770.1.S1_x_at	2/11	1	+	2685425..2688744	Leucine Rich Repeat family protein
LOC_Os01g05640	OsAffx.22770.4.S1_at	1/11	1	+	2685425..2688744	Leucine Rich Repeat family protein
LOC_Os01g05650	Os.46398.1.S1_s_at	9/11	1	+	2690331..2691774	Metallothionein-like protein type 2, putative
LOC_Os01g05650	Os.5523.1.S1_x_at	5/11	1	+	2690331..2691774	Metallothionein-like protein type 2, putative
LOC_Os01g05650	Os.35005.1.S1_x_at	2/11	1	+	2690331..2691774	Metallothionein-like protein type 2, putative
LOC_Os01g05650	Os.35005.1.S1_at	2/11	1	+	2690331..2691774	Metallothionein-like protein type 2, putative
LOC_Os01g05660	Os.523.1.S1_at	11/11	1	+	2695736..2700293	expressed protein
LOC_Os01g05670	Os.6202.1.S1_a_at	11/11	1	+	2704304..2708227	3-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g05680	Os.12757.3.S1_at	11/11	1	+	2710075..2714297	Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680	Os.12757.4.S1_x_at	9/11	1	+	2710075..2714297	Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680	Os.23850.1.A1_at	1/11	1	+	2710075..2714297	Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05694	Os.12757.1.S1_a_at	11/11	1	+	2714638..2718005	protein tyrosine phosphatase, putative, expressed
LOC_Os01g05694	Os.12757.4.S1_x_at	1/11	1	+	2714638..2718005	protein tyrosine phosphatase, putative, expressed
LOC_Os01g05710	OsAffx.22776.2.S1_at	10/11	1	+	2718449..2721599	Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710	OsAffx.23126.1.S1_at	1/11	1	+	2718449..2721599	Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710	OsAffx.22776.1.S1_at	1/11	1	+	2718449..2721599	Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05720	OsAffx.22775.1.S1_at	8/11	1	+	2724937..2727774	protein tyrosine phosphatase, putative
LOC_Os01g05720	OsAffx.23126.1.S1_at	1/11	1	+	2724937..2727774	protein tyrosine phosphatase, putative

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.523.1.S1_at--1028--351	1	Chr01:2696191..2696215 (25 bp)	CATGTTGGCAGACTTTGTGTTTGAC	LOC_Os01g05660
Os.523.1.S1_at--1043--203	1	Chr01:2696180..2696204 (25 bp)	ACTTTGTGTTTGACAGGCTTCTGAC	LOC_Os01g05660
Os.523.1.S1_at--105--93	1	Chr01:2696166..2696190 (25 bp)	AGGCTTCTGACAGAGTTCACTCTTC	LOC_Os01g05660
Os.523.1.S1_at--821--331	2	Chr02:20817081..20817537 (25 bp)	CACTCTTCAGCTTGCAAAGTTTTGA	NONE
Os.523.1.S1_at--773--513	1	Chr01:2696136..2696160 (25 bp)	GCAAAGTTTTGAGCCTAGCTAGTTT	LOC_Os01g05660
Os.523.1.S1_at--394--773	1	Chr01:2696066..2696090 (25 bp)	GGTGGAATGCTATTATCCTCATGTA	LOC_Os01g05660
Os.523.1.S1_at--1037--681	1	Chr01:2695901..2695925 (25 bp)	GTTTTTGCACCAGTTTTTGGAATGC	LOC_Os01g05660
Os.523.1.S1_at--1044--345	1	Chr01:2695812..2695836 (25 bp)	CATGTATCTATCTGAAAGTTTCCTA	LOC_Os01g05660
Os.523.1.S1_at--305--121	1	Chr01:2695796..2695820 (25 bp)	AGTTTCCTAGACTTCTATCATGTCA	LOC_Os01g05660
Os.523.1.S1_at--606--75	1	Chr01:2695776..2695801 (25 bp)	ATGTCAAAACTCTGATTCTGCCTAA	LOC_Os01g05660
Os.523.1.S1_at--419--883	2	Chr01:2695764..2695788 (25 bp)	TGATTCTGCCTAAAATTCCATGACA	LOC_Os01g05660

Target Sequence

CATGTTGGCAGACTTTGTGTTTGACAGGCTTCTGACAGAGTTCACTCTTCAGCTTGCAAAGTTTTGAGCCTAGCTAGTTT
TTTTATTTTGCCCCTAAAAATTTTGTTGGTTTAGCTGTTCTATATGGTGGAATGCTATTATCCTCATGTATATATTAACA
TTCTTTCTGTTCTCTCCTTGAAGAGAACAAGGTTTGGAGGGGTGGTTGTTNACTTGTTAGGGCTTAGGAATTCAATTCAT
GTGCTGAAAGGTTTTGAAATTTATATATTGAGTGGGGTTGAAGGAGCANTGTTTTTGCACCAGTTTTTGGAATGCGTAAT
CTTGTAGAAGTAATGCTGGAAAAAAAATACCAGTCAACAAATGGTGAGGAGCAGGAATTCATGTATCTATCTGAAAGTTT
CCTAGACTTCTATCATGTCAAAACTCTGATTCTGCCTAAAATTCCATGACA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis