Browse Element(s) Details


Os.12757.1.S1_a_at

Description gb:AK060935.1
DB_XREF= gi:32970953
TID=Os.12757.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0009G03.5 (P0009G03.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B11, full insert sequence.
FL= gb:AK060935.1 gb:AK099465.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0569411/11protein tyrosine phosphatase, putative, expressed
LOC_Os04g2028011/11protein tyrosine phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05650Os.46398.1.S1_s_at9/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.5523.1.S1_x_at5/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_x_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05660Os.523.1.S1_at11/111+2695736..2700293expressed protein
LOC_Os01g05670Os.6202.1.S1_a_at11/111+2704304..27082273-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g05680Os.12757.3.S1_at11/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.12757.4.S1_x_at9/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.23850.1.A1_at1/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05694Os.12757.1.S1_a_at11/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05694Os.12757.4.S1_x_at1/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05710OsAffx.22776.2.S1_at10/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.23126.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.22776.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05720OsAffx.22775.1.S1_at8/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05720OsAffx.23126.1.S1_at1/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05730Os.35216.2.S1_x_at11/111+2732311..2734632retrotransposon protein, putative, unclassified
LOC_Os01g05744Os.34163.1.S1_at11/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.38043.1.S1_x_at2/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744OsAffx.10820.1.S1_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.532.1.S1_s_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
GO:0004725molecular_functionprotein tyrosine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12757.1.S1_a_at--1069--3352Chr04:11313362..11313386 (25 bp)
CACCTTTATGGTATTGTATCCTACT
LOC_Os04g20280
Os.12757.1.S1_a_at--414--6912Chr04:11313377..11313401 (25 bp)
GTATCCTACTGGTATCAGCAGTGAG
LOC_Os04g20280
Os.12757.1.S1_a_at--541--2292Chr04:11313570..11313594 (25 bp)
AAATGGAACTTCTCCTTTGATTTCT
LOC_Os04g20280
Os.12757.1.S1_a_at--970--9932Chr04:11313624..11313768 (25 bp)
TACGTGCCCGGATCGCCTCACATGT
LOC_Os04g20280
Os.12757.1.S1_a_at--979--732Chr04:11313765..11313789 (25 bp)
ATGTTCACCTACATGCTTGCCCAAC
LOC_Os04g20280
Os.12757.1.S1_a_at--967--10692Chr04:11313781..11313805 (25 bp)
TTGCCCAACGGAAGAAGGCATTGGC
LOC_Os04g20280
Os.12757.1.S1_a_at--196--8292Chr04:11313797..11313821 (25 bp)
GGCATTGGCAAAGGCTAAGGCTGCA
LOC_Os04g20280
Os.12757.1.S1_a_at--278--2952Chr04:11313813..11313837 (25 bp)
AAGGCTGCATAATGGTGATGCTCAA
LOC_Os04g20280
Os.12757.1.S1_a_at--1026--7752Chr04:11313826..11313850 (25 bp)
GGTGATGCTCAAGAGCTTTCTTGAA
LOC_Os04g20280
Os.12757.1.S1_a_at--609--8652Chr04:11313860..11313884 (25 bp)
TGTGGCTTAAGGATCTGCCTAAATA
LOC_Os04g20280
Os.12757.1.S1_a_at--1041--6632Chr04:11313994..11314018 (25 bp)
GTTGTAACTGTAGTCTTCTACCAAG
LOC_Os04g20280
Target Sequence 
CACCTTTATGGTATTGTATCCTACTGGTATCAGCAGTGAGGTCGGTTTAATCTACATNGCCTTGCCTTACATGAAGGCAA
CAGAGAAATATTGCCTTAGGATGCCCAACAAATGGAACTTCTCCTTTGATTTCTCCTATGCATCCATTCTTTCTCTCGCC
GTCTACGTGCCCGGATCGCCTCACATGTTCACCTACATGCTTGCCCAACGGAAGAAGGCATTGGCAAAGGCTAAGGCTGC
ATAATGGTGATGCTCAAGAGCTTTCTTGAATTTGTCACTTGTGGCTTAAGGATCTGCCTAAATAGCTCACATTTGCTACT
CTTTTAGTAGAAGTCTGTAGATGAGGACATGTTGGAAAGAACTACTATTACACTGCCCATCATTTGTTGTAACTGTAGTC
TTCTACCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12757.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis