Browse Element(s) Details


Os.34163.1.S1_at

Description gb:AK072612.1
DB_XREF= gi:32982635
TID=Os.34163.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34163 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0009G03.11 (P0009G03.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134L09, full insert sequence.
FL= gb:AK072612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0574411/11protein tyrosine phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05694Os.12757.1.S1_a_at11/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05694Os.12757.4.S1_x_at1/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05710OsAffx.22776.2.S1_at10/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.23126.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.22776.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05720OsAffx.22775.1.S1_at8/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05720OsAffx.23126.1.S1_at1/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05730Os.35216.2.S1_x_at11/111+2732311..2734632retrotransposon protein, putative, unclassified
LOC_Os01g05744Os.34163.1.S1_at11/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.38043.1.S1_x_at2/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744OsAffx.10820.1.S1_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.532.1.S1_s_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05760Os.38043.1.S1_x_at1/111+2749020..2749814protein tyrosine phosphatase, putative
LOC_Os01g05770OsAffx.28023.2.S1_s_at11/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.1.S1_at10/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.2.S1_at2/111+2750592..2753880expressed protein
LOC_Os01g05780OsAffx.23126.1.S1_at11/111+2756171..2758195expressed protein
LOC_Os01g05780Os.532.1.S1_s_at9/111+2756171..2758195expressed protein
LOC_Os01g05780Os.38043.1.S1_x_at3/111+2756171..2758195expressed protein
LOC_Os01g05780Os.35288.1.S1_at1/111+2756171..2758195expressed protein
LOC_Os01g05790Os.45364.1.S1_at11/111+2762581..2765404SLT1 protein, putative, expressed
LOC_Os01g05800Os.534.1.S1_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.2.S1_x_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.3.S1_x_at10/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
GO:0004725molecular_functionprotein tyrosine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34163.1.S1_at--83--391Chr01:2743730..2743754 (25 bp)
ATCAAATACTTCTATGCCTCTGTCT
LOC_Os01g05744
Os.34163.1.S1_at--498--6891Chr01:2743768..2743949 (25 bp)
GTATGCCCCAGTATACCCGCACTTG
LOC_Os01g05744
Os.34163.1.S1_at--909--1191Chr01:2743934..2743958 (25 bp)
AGTATACCCGCACTTGTTCCACTAT
LOC_Os01g05744
Os.34163.1.S1_at--682--4111Chr01:2743942..2743966 (25 bp)
CGCACTTGTTCCACTATTTGATCGT
LOC_Os01g05744
Os.34163.1.S1_at--937--10791Chr01:2743947..2743971 (25 bp)
TTGTTCCACTATTTGATCGTCCAGC
LOC_Os01g05744
Os.34163.1.S1_at--129--3331Chr01:2743953..2743977 (25 bp)
CACTATTTGATCGTCCAGCGGAAGA
LOC_Os01g05744
Os.34163.1.S1_at--104--4831Chr01:2744049..2744073 (25 bp)
GCTCAGGTTGCTACCACTTCTTGAA
LOC_Os01g05744
Os.34163.1.S1_at--563--1011Chr01:2744053..2744077 (25 bp)
AGGTTGCTACCACTTCTTGAACAAA
LOC_Os01g05744
Os.34163.1.S1_at--533--6671Chr01:2744055..2744079 (25 bp)
GTTGCTACCACTTCTTGAACAAAGA
LOC_Os01g05744
Os.34163.1.S1_at--1138--2291Chr01:2744143..2744167 (25 bp)
AAATGGACATGAGTACTATTTTCAT
LOC_Os01g05744
Os.34163.1.S1_at--879--8891Chr01:2744152..2744176 (25 bp)
TGAGTACTATTTTCATGATTTGTTA
LOC_Os01g05744
Target Sequence 
ATCAAATACTTCTATGCCTCTGTCTTTTTCATGGCTTTGTATGCCCCAGTATACCCGCACTTGTTCCACTATTTGATCGT
CCAGCGGAAGAAGGCCTTGGCAAAATCAAAAACCACATAACTACTCAAGAGCTATCTAATCTGGTTTCTGCTCGCAGCTA
CAGCTCAGGTTGCTACCACTTCTTGAACAAAGAAGTAAAAATGTATTAGAATGGAAATGCCGAACTACACAGACTATCTT
TTCCCTTGGTAAATAAAAATGGACATGAGTACTATTTTCATGATTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis