Browse Element(s) Details


OsAffx.10820.1.S1_at

Description tigr:9629.m00499
TID=OsAffx.10820.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g057441/11protein tyrosine phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05694Os.12757.1.S1_a_at11/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05694Os.12757.4.S1_x_at1/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05710OsAffx.22776.2.S1_at10/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.23126.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.22776.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05720OsAffx.22775.1.S1_at8/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05720OsAffx.23126.1.S1_at1/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05730Os.35216.2.S1_x_at11/111+2732311..2734632retrotransposon protein, putative, unclassified
LOC_Os01g05744Os.34163.1.S1_at11/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.38043.1.S1_x_at2/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744OsAffx.10820.1.S1_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.532.1.S1_s_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05760Os.38043.1.S1_x_at1/111+2749020..2749814protein tyrosine phosphatase, putative
LOC_Os01g05770OsAffx.28023.2.S1_s_at11/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.1.S1_at10/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.2.S1_at2/111+2750592..2753880expressed protein
LOC_Os01g05780OsAffx.23126.1.S1_at11/111+2756171..2758195expressed protein
LOC_Os01g05780Os.532.1.S1_s_at9/111+2756171..2758195expressed protein
LOC_Os01g05780Os.38043.1.S1_x_at3/111+2756171..2758195expressed protein
LOC_Os01g05780Os.35288.1.S1_at1/111+2756171..2758195expressed protein
LOC_Os01g05790Os.45364.1.S1_at11/111+2762581..2765404SLT1 protein, putative, expressed
LOC_Os01g05800Os.534.1.S1_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.2.S1_x_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.3.S1_x_at10/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
GO:0004725molecular_functionprotein tyrosine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10820.1.S1_at--69--971Chr01:2738535..2738559 (25 bp)
AGGACGAGGAGCTCTTGCCCGTAGT
NONE
OsAffx.10820.1.S1_at--547--1871Chr01:2738538..2738562 (25 bp)
ACGAGGAGCTCTTGCCCGTAGTCTC
NONE
OsAffx.10820.1.S1_at--792--10491Chr01:2738549..2738573 (25 bp)
TTGCCCGTAGTCTCCGGCCGACGAG
NONE
OsAffx.10820.1.S1_at--128--4251Chr01:2738562..2738586 (25 bp)
CCGGCCGACGAGTTCGAAACGCATT
NONE
OsAffx.10820.1.S1_at--407--8411Chr01:2738564..2738588 (25 bp)
GGCCGACGAGTTCGAAACGCATTCG
NONE
OsAffx.10820.1.S1_at--1062--6051Chr01:2738571..2738595 (25 bp)
GAGTTCGAAACGCATTCGGAGGCCA
NONE
OsAffx.10820.1.S1_at--289--10631Chr01:2738574..2738598 (25 bp)
TTCGAAACGCATTCGGAGGCCAGGC
NONE
OsAffx.10820.1.S1_at--619--5551Chr01:2738577..2738601 (25 bp)
GAAACGCATTCGGAGGCCAGGCCAC
NONE
OsAffx.10820.1.S1_at--867--2591Chr01:2738579..2738603 (25 bp)
AACGCATTCGGAGGCCAGGCCACTG
NONE
OsAffx.10820.1.S1_at--766--3591Chr01:2738583..2738607 (25 bp)
CATTCGGAGGCCAGGCCACTGGCGA
NONE
OsAffx.10820.1.S1_at--101--3511Chr01:2740128..2740207 (25 bp)
CATGGAGCTGTACAACTTTTTTGTT
LOC_Os01g05744
Target Sequence 
AGGACGAGGAGCTCTTGCCCGTAGTCTCCGGCCGACGAGTTCGAAACGCATTCGGAGGCCAGGCCACTGGCGAGGATGGC
CGCGGCCGGCGGCTCCGATGTGGTGGGGGGATGGCGTCAGTCTTGCGGAGGCTCTACCTCTCTGTCTACAACTGGATTGT
CTTCATCGGATGGGTTCAGGTGTCGTGGTCCATGATATTGGCATTGTTGGAGAAGAGATATGAGGCCGTCTACGCTGCTG
TAGAGCAGCATCTGCTGTTCGCGCAGACTGCTGCCATCATGGAGCTGTACAACTTTTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis