Browse Element(s) Details


Os.532.1.S1_s_at

Description gb:AU097165
DB_XREF= gi:8859847
DB_XREF=AU097165
CLONE=S2705
TID=Os.532.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0009G03.12 (P0009G03.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g057809/11expressed protein
LOC_Os01g057441/11protein tyrosine phosphatase, putative, expressed
LOC_Os08g303401/11protein tyrosine phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05730Os.35216.2.S1_x_at11/111+2732311..2734632retrotransposon protein, putative, unclassified
LOC_Os01g05744Os.34163.1.S1_at11/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.38043.1.S1_x_at2/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744OsAffx.10820.1.S1_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.532.1.S1_s_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05760Os.38043.1.S1_x_at1/111+2749020..2749814protein tyrosine phosphatase, putative
LOC_Os01g05770OsAffx.28023.2.S1_s_at11/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.1.S1_at10/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.2.S1_at2/111+2750592..2753880expressed protein
LOC_Os01g05780OsAffx.23126.1.S1_at11/111+2756171..2758195expressed protein
LOC_Os01g05780Os.532.1.S1_s_at9/111+2756171..2758195expressed protein
LOC_Os01g05780Os.38043.1.S1_x_at3/111+2756171..2758195expressed protein
LOC_Os01g05780Os.35288.1.S1_at1/111+2756171..2758195expressed protein
LOC_Os01g05790Os.45364.1.S1_at11/111+2762581..2765404SLT1 protein, putative, expressed
LOC_Os01g05800Os.534.1.S1_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.2.S1_x_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.3.S1_x_at10/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05810Os.45875.2.S1_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.2.S1_x_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.1.S1_x_at3/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.2.S1_x_at2/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.1.S1_x_at1/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
GO:0004725molecular_functionprotein tyrosine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.532.1.S1_s_at--1015--9731Chr01:2757673..2757697 (25 bp)
TAATCTACATTGCTCTTCCTTTCAT
LOC_Os01g05780
Os.532.1.S1_s_at--542--71Chr01:2757681..2757705 (25 bp)
ATTGCTCTTCCTTTCATGGAGATGA
LOC_Os01g05780
Os.532.1.S1_s_at--673--911Chr01:2757798..2757822 (25 bp)
AGGCTCAACAATATCAGGCATCTGA
LOC_Os01g05780
Os.532.1.S1_s_at--443--1211Chr01:2757839..2757863 (25 bp)
AGTTTCTCCTTCAACTACTTCTATG
LOC_Os01g05780
Os.532.1.S1_s_at--332--2531Chr01:2757851..2757875 (25 bp)
AACTACTTCTATGCCAATCTCTTTT
LOC_Os01g05780
Os.532.1.S1_s_at--936--3051Chr01:2757866..2757890 (25 bp)
AATCTCTTTTTCATGGCTTCGTTTG
LOC_Os01g05780
Os.532.1.S1_s_at--872--4871Chr01:2758128..2758152 (25 bp)
GCTATCTAATCTGATTTCTGCTCGC
LOC_Os01g05780
Os.532.1.S1_s_at--895--9352Chr01:2758149..2758173 (25 bp)
TCGCAGCTACAGCTCAGGTTGCTAC
LOC_Os01g05780
Os.532.1.S1_s_at--562--1011Chr01:2758164..2758188 (25 bp)
AGGTTGCTACCGTTTCTTCAGCAAA
LOC_Os01g05780
Os.532.1.S1_s_at--310--3091Chr01:2758221..2758245 (25 bp)
AATACATGGACTATCTTTTCCCTTG
NONE
Os.532.1.S1_s_at--436--8752Chr08:18545537..18545561 (25 bp)
TGTACACGAGTACCATTTTCATGAT
LOC_Os08g30340
Target Sequence 
TAATCTACATTGCTCTTCCTTTCATGGAGATGAAGGCTCAACAATATCAGGCATCTGAGAAATCCGACAAATGGAGTTTC
TCCTTCAACTACTTCTATGCCAATCTCTTTTTCATGGCTTCGTTTGCCACAGTATATCCAGTCTTGTTTCGCTACTTGAT
CGCCNTGCGGAAGAAGGCCTTGGCAAAAGCAAAACCACATAACTACTGAAGAGCTATCTAATCTGATTTCTGCTCGCAGC
TACAGCTCAGGTTGCTACCGTTTCTTCAGCAAATAAGTAAAAGTGTATTAGAATGGAAATGCCGAAATACATGGACTATC
TTTTCCCTTGGTAAATAAAAATGTACACGAGTACCATTTTCATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.532.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis