Browse Element(s) Details


Os.35216.2.S1_x_at

Description gb:NM_184384.1
DB_XREF= gi:34895857
GEN=P0009G03.9
TID=Os.35216.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0009G03.9 (P0009G03.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0009G03.9 (P0009G03.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0573011/11retrotransposon protein, putative, unclassified
LOC_Os02g3476011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05670Os.6202.1.S1_a_at11/111+2704304..27082273-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g05680Os.12757.3.S1_at11/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.12757.4.S1_x_at9/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.23850.1.A1_at1/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05694Os.12757.1.S1_a_at11/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05694Os.12757.4.S1_x_at1/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05710OsAffx.22776.2.S1_at10/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.23126.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.22776.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05720OsAffx.22775.1.S1_at8/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05720OsAffx.23126.1.S1_at1/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05730Os.35216.2.S1_x_at11/111+2732311..2734632retrotransposon protein, putative, unclassified
LOC_Os01g05744Os.34163.1.S1_at11/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.38043.1.S1_x_at2/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744OsAffx.10820.1.S1_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.532.1.S1_s_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05760Os.38043.1.S1_x_at1/111+2749020..2749814protein tyrosine phosphatase, putative
LOC_Os01g05770OsAffx.28023.2.S1_s_at11/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.1.S1_at10/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.2.S1_at2/111+2750592..2753880expressed protein
LOC_Os01g05780OsAffx.23126.1.S1_at11/111+2756171..2758195expressed protein
LOC_Os01g05780Os.532.1.S1_s_at9/111+2756171..2758195expressed protein
LOC_Os01g05780Os.38043.1.S1_x_at3/111+2756171..2758195expressed protein
LOC_Os01g05780Os.35288.1.S1_at1/111+2756171..2758195expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35216.2.S1_x_at--298--6072Chr02:20841470..20841494 (25 bp)
GAGTTCAGTTGCTTGGACGTCCTAC
LOC_Os02g34760
Os.35216.2.S1_x_at--633--8012Chr02:20841510..20841534 (25 bp)
GGAGGCTCTTGCAGATCTAATCGCT
LOC_Os02g34760
Os.35216.2.S1_x_at--1103--3732Chr02:20841526..20841550 (25 bp)
CTAATCGCTGAGGAGACACGTCTTT
LOC_Os02g34760
Os.35216.2.S1_x_at--630--2152Chr02:20841541..20841565 (25 bp)
ACACGTCTTTGTTCCTTGGACACTA
LOC_Os02g34760
Os.35216.2.S1_x_at--306--2992Chr02:20841589..20841613 (25 bp)
AATGTCATGGCAGCACCTCAGCGTG
LOC_Os02g34760
Os.35216.2.S1_x_at--567--9012Chr02:20841639..20841663 (25 bp)
TGAATTCAGTTCCATCGCCAAAAGT
LOC_Os02g34760
Os.35216.2.S1_x_at--967--2852Chr02:20841660..20841684 (25 bp)
AAGTGATCGTATTTGCTCTCATTGC
LOC_Os02g34760
Os.35216.2.S1_x_at--722--6592Chr02:20841709..20841733 (25 bp)
GATTGCTTCTATCTTCATCCAGAGA
LOC_Os02g34760
Os.35216.2.S1_x_at--302--4872Chr02:20841787..20841811 (25 bp)
GCTAGTGCTCCTGTTTTCTTGGATA
LOC_Os02g34760
Os.35216.2.S1_x_at--721--10552Chr02:20841802..20841826 (25 bp)
TTCTTGGATATCACTGCTGCTGGTC
LOC_Os02g34760
Os.35216.2.S1_x_at--256--7312Chr02:20841872..20841896 (25 bp)
GTGCTCCTCAGTCATTGGTTGCAAG
LOC_Os02g34760
Target Sequence 
GAGTTCAGTTGCTTGGACGTCCTACACGTCCTACTATGGCGGAGGCTCTTGCAGATCTAATCGCTGAGGAGACACGTCTT
TGTTCCTTGGACACTACTCCTACTCCTGTGGTTACTCACAATGTCATGGCAGCACCTCAGCGTGTTGGAGCTCCTATGGG
CGGGATCCCTGAATTCAGTTCCATCGCCAAAAGTGATCGTATTTGCTCTCATTGCAAGAAGGTTGGACATATTTCCGATG
ATTGCTTCTATCTTCATCCAGAGAAGTTGGCTGATTATCGAGCTAGGCGTGCAGCGGTCCCCCGTCCTCGTGCGACGGCT
AGTGCTCCTGTTTTCTTGGATATCACTGCTGCTGGTCCTTCTAGTACCAGTGCTGGTGGCAGTGCCTCTAGCGCCGTCTC
ATGTGCTCCTCAGTCATTGGTTGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35216.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis