Browse Element(s) Details


Os.23850.1.A1_at

Description gb:CA760658
DB_XREF= gi:25804697
DB_XREF=BR060006B20G07.ab1
CLONE=BR060006B20G07.ab1
TID=Os.23850.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23850 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g056801/11Prenyltransferase and squalene oxidase repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05640OsAffx.22770.3.S1_x_at11/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.1.S1_x_at2/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.4.S1_at1/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05650Os.46398.1.S1_s_at9/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.5523.1.S1_x_at5/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_x_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05660Os.523.1.S1_at11/111+2695736..2700293expressed protein
LOC_Os01g05670Os.6202.1.S1_a_at11/111+2704304..27082273-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g05680Os.12757.3.S1_at11/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.12757.4.S1_x_at9/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.23850.1.A1_at1/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05694Os.12757.1.S1_a_at11/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05694Os.12757.4.S1_x_at1/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05710OsAffx.22776.2.S1_at10/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.23126.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.22776.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05720OsAffx.22775.1.S1_at8/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05720OsAffx.23126.1.S1_at1/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05730Os.35216.2.S1_x_at11/111+2732311..2734632retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0018344biological_processprotein geranylgeranylation
GO:0005953cellular_componentCAAX-protein geranylgeranyltransferase complex
GO:0004662molecular_functionCAAX-protein geranylgeranyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23850.1.A1_at--616--1171Chr01:2711304..2711373 (24 bp)
AGTAACCATGCCTGCCTTGACTGAT
LOC_Os01g05680
Os.23850.1.A1_at--266--4451Chr08:17255037..17255058 (22 bp)
GCCTTGACTGATGCGGGCCAAATTT
NONE
Os.23850.1.A1_at--732--3091Chr08:17255057..17255076 (20 bp)
AATTTAAGCGGCAGCCTGCACTAAC
NONE
Os.23850.1.A1_at--907--2571NONE
AACGGGCAATGGTGTCGCATGCCGC
NONE
Os.23850.1.A1_at--1027--3591NONE
CATTGCTCACCATTCCAGTCGAGGG
NONE
Os.23850.1.A1_at--60--8211NONE
GGAAGTCCGGCCATATCACTGCTAG
NONE
Os.23850.1.A1_at--808--6291Chr08:17255146..17255170 (25 bp)
GATGATGCATGGCTAGCTCCCTTCG
NONE
Os.23850.1.A1_at--1131--5171NONE
GAATATGGCCATTGCAGCCATCGCC
NONE
Os.23850.1.A1_at--120--10131NONE
TATGCATTCTTCACGAGTTCTTTTG
NONE
Os.23850.1.A1_at--201--6691NONE
GTTCTTTTGCTTCAGGAGTTCCAAG
NONE
Os.23850.1.A1_at--332--6331Chr08:17255350..17255374 (25 bp)
GATGCAAAAGCATGACCTGGCGATA
NONE
Target Sequence 
AGTAACCATGCCTGCCTTGACTGATGCGGGCCAAATTTAAGCGGCAGCCTGCACTAACCCAACGGGCAATGGTGTCGCAT
GCCGCGCCCGCATTGCTCACCATTCCAGTCGAGGGGAAGTCCGGCCATATCACTGCTAGCGAGAGATGATGCATGGCTAG
CTCCCTTCGCTCCCCTCAGCTACCATTGTAAGTTTGTAAGTGGATCTTGCTTGGTGGTAGTAAAAAGAATATGGCCATTG
CAGCCATCGCCGCCCGAGGAAACGATGACAGCATCGATCTATATGCATTCTTCACGAGTTCTTTTGCTTCAGGAGTTCCA
AGCACAGGCGGATGCAAAAGCATGACCTGGCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23850.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis