Browse Element(s) Details


Os.534.3.S1_x_at

Description gb:NM_184389.1
DB_XREF= gi:34895867
GEN=P0009G03.14
TID=Os.534.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.534 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ppf-1 protein (P0009G03.14), mRNA.
PROD=putative ppf-1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0580010/11Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05744Os.34163.1.S1_at11/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.38043.1.S1_x_at2/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744OsAffx.10820.1.S1_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.532.1.S1_s_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05760Os.38043.1.S1_x_at1/111+2749020..2749814protein tyrosine phosphatase, putative
LOC_Os01g05770OsAffx.28023.2.S1_s_at11/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.1.S1_at10/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.2.S1_at2/111+2750592..2753880expressed protein
LOC_Os01g05780OsAffx.23126.1.S1_at11/111+2756171..2758195expressed protein
LOC_Os01g05780Os.532.1.S1_s_at9/111+2756171..2758195expressed protein
LOC_Os01g05780Os.38043.1.S1_x_at3/111+2756171..2758195expressed protein
LOC_Os01g05780Os.35288.1.S1_at1/111+2756171..2758195expressed protein
LOC_Os01g05790Os.45364.1.S1_at11/111+2762581..2765404SLT1 protein, putative, expressed
LOC_Os01g05800Os.534.1.S1_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.2.S1_x_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.3.S1_x_at10/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05810Os.45875.2.S1_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.2.S1_x_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.1.S1_x_at3/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.2.S1_x_at2/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.1.S1_x_at1/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05830Os.10096.1.S1_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.1.S1_a_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_x_at10/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_at7/111+2788178..2792659expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0010020biological_processchloroplast fission
GO:0045038biological_processprotein import into chloroplast thylakoid membrane
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009706cellular_componentchloroplast inner membrane
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.534.3.S1_x_at--1055--3091Chr01:2768677..2768701 (25 bp)
AATACCTGTCTGGATTGGCCTCTAC
LOC_Os01g05800
Os.534.3.S1_x_at--838--6951NONE
GTAGCAAACGAGTTTGTCTCTATGG
NONE
Os.534.3.S1_x_at--587--8111Chr01:2769363..2769384 (22 bp)
GGAAATCATGAAGCCACCCCAGACT
LOC_Os01g05800
Os.534.3.S1_x_at--255--8731Chr01:2769538..2769562 (25 bp)
TGATAGGGTGGTTCTCTTTGTCAGT
LOC_Os01g05800
Os.534.3.S1_x_at--784--1131Chr01:2769560..2769584 (25 bp)
AGTGCCGTCAGGGTTGTCCATTTAT
LOC_Os01g05800
Os.534.3.S1_x_at--918--2251Chr01:2769747..2769771 (25 bp)
AAATAATATCCTCAGCACAGCCCAG
LOC_Os01g05800
Os.534.3.S1_x_at--665--2151Chr01:2769763..2769787 (25 bp)
ACAGCCCAGCAAGTTTGGTTACGGA
LOC_Os01g05800
Os.534.3.S1_x_at--575--6171Chr01:2769794..2769818 (25 bp)
GAGGAGCAAAGCCTGTTGTCAATCA
LOC_Os01g05800
Os.534.3.S1_x_at--350--2411Chr01:2769852..2769876 (25 bp)
AAAACGTACGAGTGCTCAACCAGCC
LOC_Os01g05800
Os.534.3.S1_x_at--216--3291Chr01:2770007..2770031 (25 bp)
CAAAGCGCTTGCTGCAGGAGATTCA
LOC_Os01g05800
Os.534.3.S1_x_at--1081--1251Chr01:2770025..2770049 (25 bp)
AGATTCAGATCTTTCAGCCTCAACA
LOC_Os01g05800
Target Sequence 
AATACCTGTCTGGATTGGCCTCTACCAAGCCCTTTCAAATGTAGCAAACGAGTTTGTCTCTATGGAAATCATGAAGCCAC
CCCAGACTGATGATCCATCGCAGAAGAACACACTGCTTGTTTTGAAATTTCTTCCATTTATGATAGGGTGGTTCTCTTTG
TCAGTGCCGTCAGGGTTGTCCATTTATTGGTTCACAAATAATATCCTCAGCACAGCCCAGCAAGTTTGGTTACGGAAACT
GGGAGGAGCAAAGCCTGTTGTCAATCAGGGGGGTAGTGGGATAATTACTGCAGGACGAGCAAAACGTACGAGTGCTCAAC
CAGCCCAACCTGGTGAAAGATTTAAACAGCTGAAAGAAGAGGAGAGCAAGAGAAAAGGCAACAAAGCGCTTGCTGCAGGA
GATTCAGATCTTTCAGCCTCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.534.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis