Browse Element(s) Details


Os.10096.1.S1_a_at

Description gb:AK063435.1
DB_XREF= gi:32973453
TID=Os.10096.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10096 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0009G03.17 (P0009G03.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-E04, full insert sequence.
FL= gb:AK063435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0583011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05790Os.45364.1.S1_at11/111+2762581..2765404SLT1 protein, putative, expressed
LOC_Os01g05800Os.534.1.S1_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.2.S1_x_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.3.S1_x_at10/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05810Os.45875.2.S1_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.2.S1_x_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.1.S1_x_at3/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.2.S1_x_at2/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.1.S1_x_at1/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05830Os.10096.1.S1_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.1.S1_a_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_x_at10/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_at7/111+2788178..2792659expressed protein
LOC_Os01g05840Os.536.1.S1_at11/111+2797316..2800503oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g05850NANA1+2800581..2801646hypothetical protein
LOC_Os01g05860OsAffx.23127.1.S1_at11/111+2802442..2804253pentatricopeptide, putative
LOC_Os01g05870Os.32577.1.S1_at11/111+2807115..2811819Leucine Rich Repeat family protein, expressed
LOC_Os01g05880OsAffx.10926.1.S1_at11/111+2811977..2813203F-box domain containing protein, expressed
LOC_Os01g05890OsAffx.22772.1.S1_at11/111+2814452..2815699F-box domain containing protein
LOC_Os01g05900Os.19803.5.S1_at11/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05900OsAffx.10929.1.S1_x_at6/111+2816839..2817576Histone H2B.2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10096.1.S1_a_at--104--1411Chr01:2792060..2792084 (25 bp)
AGACTGTCTACTACTACATCCTCAA
LOC_Os01g05830
Os.10096.1.S1_a_at--595--3731Chr01:2792073..2792097 (25 bp)
CTACATCCTCAACCTAATTGTCTCA
LOC_Os01g05830
Os.10096.1.S1_a_at--946--3531Chr01:2792076..2792100 (25 bp)
CATCCTCAACCTAATTGTCTCAAGC
LOC_Os01g05830
Os.10096.1.S1_a_at--702--9251Chr01:2792078..2792102 (25 bp)
TCCTCAACCTAATTGTCTCAAGCTG
LOC_Os01g05830
Os.10096.1.S1_a_at--789--9711Chr01:2792081..2792105 (25 bp)
TCAACCTAATTGTCTCAAGCTGGGA
LOC_Os01g05830
Os.10096.1.S1_a_at--724--2631Chr01:2792083..2792107 (25 bp)
AACCTAATTGTCTCAAGCTGGGAGA
LOC_Os01g05830
Os.10096.1.S1_a_at--1118--3151Chr01:2792088..2792112 (25 bp)
AATTGTCTCAAGCTGGGAGAACATG
LOC_Os01g05830
Os.10096.1.S1_a_at--1123--8051Chr01:2792103..2792127 (25 bp)
GGAGAACATGAGACGGCCCAACCAC
LOC_Os01g05830
Os.10096.1.S1_a_at--63--691Chr01:2792110..2792134 (25 bp)
ATGAGACGGCCCAACCACCAAAGGA
LOC_Os01g05830
Os.10096.1.S1_a_at--1098--2631Chr01:2792122..2792146 (25 bp)
AACCACCAAAGGATGCATAGGGACT
LOC_Os01g05830
Os.10096.1.S1_a_at--967--4351Chr01:2792124..2792148 (25 bp)
CCACCAAAGGATGCATAGGGACTGA
LOC_Os01g05830
Target Sequence 
AGACTGTCTACTACTACATCCTCAACCTAATTGTCTCAAGCTGGGAGAACATGAGACGGCCCAACCACCAAAGGATGCAT
AGGGACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10096.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis