Browse Element(s) Details


Os.10096.1.S1_at

Description gb:AK063435.1
DB_XREF= gi:32973453
TID=Os.10096.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10096 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0009G03.17 (P0009G03.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-E04, full insert sequence.
FL= gb:AK063435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0583011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05790Os.45364.1.S1_at11/111+2762581..2765404SLT1 protein, putative, expressed
LOC_Os01g05800Os.534.1.S1_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.2.S1_x_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.3.S1_x_at10/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05810Os.45875.2.S1_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.2.S1_x_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.1.S1_x_at3/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.2.S1_x_at2/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.1.S1_x_at1/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05830Os.10096.1.S1_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.1.S1_a_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_x_at10/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_at7/111+2788178..2792659expressed protein
LOC_Os01g05840Os.536.1.S1_at11/111+2797316..2800503oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g05850NANA1+2800581..2801646hypothetical protein
LOC_Os01g05860OsAffx.23127.1.S1_at11/111+2802442..2804253pentatricopeptide, putative
LOC_Os01g05870Os.32577.1.S1_at11/111+2807115..2811819Leucine Rich Repeat family protein, expressed
LOC_Os01g05880OsAffx.10926.1.S1_at11/111+2811977..2813203F-box domain containing protein, expressed
LOC_Os01g05890OsAffx.22772.1.S1_at11/111+2814452..2815699F-box domain containing protein
LOC_Os01g05900Os.19803.5.S1_at11/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05900OsAffx.10929.1.S1_x_at6/111+2816839..2817576Histone H2B.2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10096.1.S1_at--1001--6791Chr01:2792217..2792241 (25 bp)
GTTTTCAAGGGTAGCCTGGTAGCTC
LOC_Os01g05830
Os.10096.1.S1_at--28--4491Chr01:2792230..2792254 (25 bp)
GCCTGGTAGCTCTTATGTTTGTTCA
LOC_Os01g05830
Os.10096.1.S1_at--824--211Chr01:2792274..2792298 (25 bp)
ATTTGTCTGTTTGTTATGCTGTTTA
LOC_Os01g05830
Os.10096.1.S1_at--1035--7611Chr01:2792346..2792370 (25 bp)
GGGAAGCCTGCAAATTTCATCAGAC
LOC_Os01g05830
Os.10096.1.S1_at--273--2791Chr01:2792438..2792462 (25 bp)
AAGAGTCTCCATAGAGTCCCTTTTG
LOC_Os01g05830
Os.10096.1.S1_at--589--3011Chr01:2792464..2792488 (25 bp)
AATGCAGTGCATGGTCTGTTGAGGT
LOC_Os01g05830
Os.10096.1.S1_at--767--8311Chr01:2792504..2792528 (25 bp)
GGCTAATGTGCAGTTTGTACCTTGT
LOC_Os01g05830
Os.10096.1.S1_at--568--331Chr01:2792535..2792559 (25 bp)
ATACAACTAAGGGTCCAGGCAATGA
LOC_Os01g05830
Os.10096.1.S1_at--1019--3191Chr01:2792554..2792578 (25 bp)
CAATGAATTGCTTAGGACCTCTGCA
LOC_Os01g05830
Os.10096.1.S1_at--924--1751Chr01:2792570..2792594 (25 bp)
ACCTCTGCACTGTAGCTGCCATGAG
LOC_Os01g05830
Os.10096.1.S1_at--151--1971Chr01:2792604..2792628 (25 bp)
ACTGTTTATCTGTAGTCTGTACTGC
LOC_Os01g05830
Target Sequence 
GTTTTCAAGGGTAGCCTGGTAGCTCTTATGTTTGTTCAAATAACATTTGCTGTATAAATTTGTCTGTTTGTTATGCTGTT
TACACGGGGGATGGAGTGAGAAAAAAAAANGTAATGCAAGAGAAAAGAAAGGGAAGCCTGCAAATTTCATCAGACTTTTC
AGATAGGAAATTACATTGTTCAGATTTAGTATATGTCAATAATCAATGGCCGAGATTTTAGGAAGAGTCTCCATAGAGTC
CCTTTTGCAATGCAGTGCATGGTCTGTTGAGGTAGTTGAGCAGCAAATGGCTAATGTGCAGTTTGTACCTTGTGTTGTAA
TACAACTAAGGGTCCAGGCAATGAATTGCTTAGGACCTCTGCACTGTAGCTGCCATGAGCAAGAGTGAACTGTTTATCTG
TAGTCTGTACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis