Browse Element(s) Details


Os.19803.4.S1_at

Description gb:AU082596
DB_XREF= gi:7134636
DB_XREF=AU082596
CLONE=C10840
TID=Os.19803.4
CNT=14
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.19803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H2B (P0009G03.33), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0561010/11Histone H2B.2, putative, expressed
LOC_Os01g056309/11Histone H2B.2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05550OsAffx.10565.2.A1_at11/111+2647936..2648391expressed protein
LOC_Os01g05560Os.6138.1.S1_at10/111+2649467..2652437expressed protein
LOC_Os01g05570Os.6138.2.S1_at8/111+2657624..2658103hypothetical protein
LOC_Os01g05580OsAffx.26236.1.S1_at3/111+2660341..2660874expressed protein
LOC_Os01g05590Os.35005.2.S1_at11/111+2663306..2664587retrotransposon protein, putative, LINE subclass
LOC_Os01g05600Os.33469.1.S2_at3/111+2666754..2669726NBS-LRR disease resistance protein, putative
LOC_Os01g05610Os.19803.4.S1_at10/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05610OsAffx.10929.1.S1_x_at7/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05620Os.33469.1.S2_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05620Os.33469.1.S1_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05630Os.19803.4.S1_at9/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05630OsAffx.10929.1.S1_x_at7/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05640OsAffx.22770.3.S1_x_at11/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.1.S1_x_at2/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.4.S1_at1/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05650Os.46398.1.S1_s_at9/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.5523.1.S1_x_at5/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_x_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05660Os.523.1.S1_at11/111+2695736..2700293expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19803.4.S1_at--1125--5272Chr01:2684227..2684251 (25 bp)
GAATGTGATTCCTGGGTATGTGATG
LOC_Os01g05630
Os.19803.4.S1_at--145--6932Chr01:2684242..2684266 (25 bp)
GTATGTGATGTTTGACCGCCCTGTG
LOC_Os01g05630
Os.19803.4.S1_at--1071--3871Chr01:2684262..2684598 (25 bp)
CTGTGCCTGCTGGTCAACGAGTGAT
NONE
Os.19803.4.S1_at--584--7831Chr01:2671917..2671941 (25 bp)
GGTCAACGAGTGATAACTAGATCTA
LOC_Os01g05610
Os.19803.4.S1_at--278--9812Chr01:2684286..2684310 (25 bp)
TAACTAGATCTAATTTTTGTGGAAC
LOC_Os01g05630
Os.19803.4.S1_at--753--7512Chr01:2684304..2684328 (25 bp)
GTGGAACTATTTACATGGTTGCTAC
LOC_Os01g05630
Os.19803.4.S1_at--926--8572Chr01:2684319..2684343 (25 bp)
TGGTTGCTACTTGCATTCTGTTCAA
LOC_Os01g05630
Os.19803.4.S1_at--192--2572Chr01:2684342..2684366 (25 bp)
AACTGTTGTAAATTCCTCTGTCACT
LOC_Os01g05630
Os.19803.4.S1_at--487--9852Chr01:2684350..2684374 (25 bp)
TAAATTCCTCTGTCACTCGTTGGAG
LOC_Os01g05630
Os.19803.4.S1_at--679--7072Chr01:2684361..2684385 (25 bp)
GTCACTCGTTGGAGTTTTATTCTCT
LOC_Os01g05630
Os.19803.4.S1_at--288--3892Chr01:2684405..2684429 (25 bp)
CTGGGCATGCTTTTGGGAAACTATA
LOC_Os01g05630
Target Sequence 
GAATGTGATTCCTGGGTATGTGATGTTTGACCGCCCTGTGCCTGCTGGTCAACGAGTGATAACTAGATCTAATTTTTGTG
GAACTATTTACATGGTTGCTACTTGCATTCTGTTCAACTGTTGTAAATTCCTCTGTCACTCGTTGGAGTTTTATTCTCTG
NAGCATGTGTGGAATTGCCTGGGCATGCTTTTGGGAAACTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19803.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis