Browse Element(s) Details


Os.6138.1.S1_at

Description gb:AK101727.1
DB_XREF= gi:32986936
TID=Os.6138.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434B04.21 (P0434B04.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061D21, full insert sequence.
FL= gb:AK109379.2 gb:AK101727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0556010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05520Os.30995.1.S1_at11/111+2626176..2626852expressed protein
LOC_Os01g05530Os.38086.2.S1_x_at11/111+2629420..2634632expressed protein
LOC_Os01g05530Os.38086.1.S1_at8/111+2629420..2634632expressed protein
LOC_Os01g05540OsAffx.10922.1.S1_at11/111+2637802..2641467expressed protein
LOC_Os01g05540Os.38296.1.S1_at10/111+2637802..2641467expressed protein
LOC_Os01g05550OsAffx.10565.2.A1_at11/111+2647936..2648391expressed protein
LOC_Os01g05560Os.6138.1.S1_at10/111+2649467..2652437expressed protein
LOC_Os01g05570Os.6138.2.S1_at8/111+2657624..2658103hypothetical protein
LOC_Os01g05580OsAffx.26236.1.S1_at3/111+2660341..2660874expressed protein
LOC_Os01g05590Os.35005.2.S1_at11/111+2663306..2664587retrotransposon protein, putative, LINE subclass
LOC_Os01g05600Os.33469.1.S2_at3/111+2666754..2669726NBS-LRR disease resistance protein, putative
LOC_Os01g05610Os.19803.4.S1_at10/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05610OsAffx.10929.1.S1_x_at7/111+2671203..2672174Histone H2B.2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6138.1.S1_at--765--5691Chr01:2652128..2652152 (25 bp)
GACTAGGCTGTATTTGGACTGAAAC
LOC_Os01g05560
Os.6138.1.S1_at--304--5551Chr01:2652148..2652172 (25 bp)
GAAACTGTCCACTATGATGAATGTA
LOC_Os01g05560
Os.6138.1.S1_at--843--10331Chr01:2652210..2652234 (25 bp)
TTTAGATTTGGTGTTTCATGCGAAA
LOC_Os01g05560
Os.6138.1.S1_at--283--3511Chr01:2652226..2652250 (25 bp)
CATGCGAAATTTGACTTGGTTTTGG
LOC_Os01g05560
Os.6138.1.S1_at--308--8571Chr01:2652242..2652266 (25 bp)
TGGTTTTGGTTATGCATCTGCTTGA
LOC_Os01g05560
Os.6138.1.S1_at--682--4891Chr01:2652261..2652285 (25 bp)
GCTTGAACTAGACAACTTCTCCGGT
LOC_Os01g05560
Os.6138.1.S1_at--337--10031Chr01:2652269..2652293 (25 bp)
TAGACAACTTCTCCGGTGTCTGTTG
LOC_Os01g05560
Os.6138.1.S1_at--628--7171Chr01:2652286..2652310 (25 bp)
GTCTGTTGTCTTGTTTATGGTAATT
LOC_Os01g05560
Os.6138.1.S1_at--886--831Chr01:2652322..2652346 (25 bp)
ATGGAATCGTTATGGATCCTTATAA
LOC_Os01g05560
Os.6138.1.S1_at--842--8531Chr01:2652390..2652414 (25 bp)
TGGACGAATTGCGATGAAACTAGAT
LOC_Os01g05560
Os.6138.1.S1_at--278--9831Chr01:2652414..2652438 (25 bp)
TAAAAGCTCTGCGTTTTGCTGCGGA
NONE
Target Sequence 
GACTAGGCTGTATTTGGACTGAAACTGTCCACTATGATGAATGTAAGTTTGGTGAAAGCAGCAGTAATTTAGCAGCTATA
ATTTTAGATTTGGTGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGACAACTTCTCCGGTGT
CTGTTGTCTTGTTTATGGTAATTTGTGGCTAGCNATGGAATCGTTATGGATCCTTATAAATATGCTTATATTCGTTGGTG
AAGCCNCGGGTTCTGTTTGAAATGGACGAATTGCGATGAAACTAGATAAAAGCTCTGCGTTTTGCTGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis