Browse Element(s) Details


Os.38086.1.S1_at

Description gb:AK099977.1
DB_XREF= gi:32985186
TID=Os.38086.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434B04.17 (P0434B04.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128N08, full insert sequence.
FL= gb:AK099977.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g055308/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05500Os.7837.1.S1_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.46048.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.7837.1.S1_s_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500OsAffx.10921.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05510Os.49377.1.S1_at11/111+2610474..2619994expressed protein
LOC_Os01g05520Os.30995.1.S1_at11/111+2626176..2626852expressed protein
LOC_Os01g05530Os.38086.2.S1_x_at11/111+2629420..2634632expressed protein
LOC_Os01g05530Os.38086.1.S1_at8/111+2629420..2634632expressed protein
LOC_Os01g05540OsAffx.10922.1.S1_at11/111+2637802..2641467expressed protein
LOC_Os01g05540Os.38296.1.S1_at10/111+2637802..2641467expressed protein
LOC_Os01g05550OsAffx.10565.2.A1_at11/111+2647936..2648391expressed protein
LOC_Os01g05560Os.6138.1.S1_at10/111+2649467..2652437expressed protein
LOC_Os01g05570Os.6138.2.S1_at8/111+2657624..2658103hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38086.1.S1_at--263--6551Chr01:2634361..2634385 (25 bp)
GATTTTCTCATACATCTGCTATTCA
LOC_Os01g05530
Os.38086.1.S1_at--658--5931Chr01:2634420..2634444 (25 bp)
GAGCATGCCTGAAAATCTGTGCAGA
LOC_Os01g05530
Os.38086.1.S1_at--699--5471Chr01:2634470..2634494 (25 bp)
GAACTCGTGGTAGCTTTGTGCGGAA
LOC_Os01g05530
Os.38086.1.S1_at--373--7311Chr01:2634487..2634511 (25 bp)
GTGCGGAATCACGTTTTGGTTGAAC
LOC_Os01g05530
Os.38086.1.S1_at--291--7431Chr01:2634526..2634550 (25 bp)
GTGTTCAGAACAGCCGCACAGCACA
LOC_Os01g05530
Os.38086.1.S1_at--738--3471Chr01:2634549..2634573 (25 bp)
CAGGTGTAGTTTGCTCGATGTGTTC
LOC_Os01g05530
Os.38086.1.S1_at--78--10111Chr01:2634578..2634602 (25 bp)
TATGTGGTTTATCTCAGTTCGTGAC
LOC_Os01g05530
Os.38086.1.S1_at--997--6711Chr01:2634594..2634618 (25 bp)
GTTCGTGACAGCTTCGTGCTAATCA
LOC_Os01g05530
Os.38086.1.S1_at--583--7431Chr01:2634661..2634685 (25 bp)
GTGTTTGCTCAAATATCCGTGCTAT
NONE
Os.38086.1.S1_at--128--552Chr09:22630390..22630450 (24 bp)
ATCCCTTTCTTCCTAGGTTGAGTTG
NONE
Os.38086.1.S1_at--782--10291Chr01:2634901..2634920 (20 bp)
TTTCCTGTATGGCTTTTCTTTTATT
NONE
Target Sequence 
GATTTTCTCATACATCTGCTATTCATGACANCTTGGATTGNCTGAATAGCATTTTTGTTGAGCATGCCTGAAAATCTGTG
CAGACATCTGTTAATGTTTTTATTTGTTTGAACTCGTGGTAGCTTTGTGCGGAATCACGTTTTGGTTGAACTTGCCTGAC
AATATGTGTTCAGAACAGCCGCACAGCACAGGTGTAGTTTGCTCGATGTGTTCGGAATATGTGGTTTATCTCAGTTCGTG
ACAGCTTCGTGCTAATCACGTTTAGTTGAGTATGACCGAAAATGTGTGCACGTATTGGTGGTGTTTGCTCAAATATCCGT
GCTATTGTTTTTTTCATGTTTTGGAAGTCTCTGCATGCTTTGTGGTNTGTCTTCATGTGTCTATACCATACNCCCTCTGT
CCTAAAGGGGCANATCCCTTTCTTCCTAGGTTGAGTTGTTGCGGAACGGATGGAGTATGAGACATTCTTTTTCACTACTT
GTAAGATTGACAGATAGTTAATTATTCCNTTGTTTAGTAATGGCAAATAGTTTCTGTTTATTTTCCTGTATGGCTTTTCT
TTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis