Browse Element(s) Details


Os.38296.1.S1_at

Description gb:AK060256.1
DB_XREF= gi:32970274
TID=Os.38296.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434B04.18 (P0434B04.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-E09, full insert sequence.
FL= gb:AK099174.1 gb:AK060256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0554010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05510Os.49377.1.S1_at11/111+2610474..2619994expressed protein
LOC_Os01g05520Os.30995.1.S1_at11/111+2626176..2626852expressed protein
LOC_Os01g05530Os.38086.2.S1_x_at11/111+2629420..2634632expressed protein
LOC_Os01g05530Os.38086.1.S1_at8/111+2629420..2634632expressed protein
LOC_Os01g05540OsAffx.10922.1.S1_at11/111+2637802..2641467expressed protein
LOC_Os01g05540Os.38296.1.S1_at10/111+2637802..2641467expressed protein
LOC_Os01g05550OsAffx.10565.2.A1_at11/111+2647936..2648391expressed protein
LOC_Os01g05560Os.6138.1.S1_at10/111+2649467..2652437expressed protein
LOC_Os01g05570Os.6138.2.S1_at8/111+2657624..2658103hypothetical protein
LOC_Os01g05580OsAffx.26236.1.S1_at3/111+2660341..2660874expressed protein
LOC_Os01g05590Os.35005.2.S1_at11/111+2663306..2664587retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38296.1.S1_at--853--771NONE
ATGTCCTTATGAGTATATTCCATGA
NONE
Os.38296.1.S1_at--887--10211Chr01:2638056..2638080 (25 bp)
TATTCCATGATGTTGGAGCCACCAG
LOC_Os01g05540
Os.38296.1.S1_at--254--8091Chr01:2638042..2638066 (25 bp)
GGAGCCACCAGAAGTTTATTGTAGA
LOC_Os01g05540
Os.38296.1.S1_at--759--10031Chr01:2638021..2638045 (25 bp)
TAGAGGCTGGCTTAAGAAAACGGTT
LOC_Os01g05540
Os.38296.1.S1_at--873--6951Chr01:2637991..2638015 (25 bp)
GTAGCACCCTACAATTCCAGTAAAT
LOC_Os01g05540
Os.38296.1.S1_at--326--9571Chr01:2637966..2637990 (25 bp)
TCTTCAGAGTACAACAGCTTTGCAT
LOC_Os01g05540
Os.38296.1.S1_at--1011--3671Chr01:2637949..2637973 (25 bp)
CTTTGCATGGCTTCGAACTTAGGGA
LOC_Os01g05540
Os.38296.1.S1_at--686--1191Chr01:2637925..2637949 (25 bp)
AGTAGTGCTGCAGGGCATCTTTTGC
LOC_Os01g05540
Os.38296.1.S1_at--614--211Chr01:2637871..2637895 (25 bp)
ATTTGAGGAGAAATGATCCCCTGTA
LOC_Os01g05540
Os.38296.1.S1_at--585--8851Chr01:2637858..2637882 (25 bp)
TGATCCCCTGTAGTATCTATGCTGG
LOC_Os01g05540
Os.38296.1.S1_at--1020--4711Chr01:2637838..2637862 (25 bp)
GCTGGACTGATCTAATTGAACCTGT
LOC_Os01g05540
Target Sequence 
ATGTCCTTATGAGTATATTCCATGATGTTGGAGCCACCAGAAGTTTATTGTAGAGGCTGGCTTAAGAAAACGGTTTACTT
GTAGCACCCTACAATTCCAGTAAATTCTTCAGAGTACAACAGCTTTGCATGGCTTCGAACTTAGGGAGTAGTGCTGCAGG
GCATCTTTTGCTTGTGTATTAAGTGGATTTAGAATATGATATTTGAGGAGAAATGATCCCCTGTAGTATCTATGCTGGAC
TGATCTAATTGAACCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis