Browse Element(s) Details


OsAffx.10922.1.S1_at

Description tigr:9629.m00480
TID=OsAffx.10922.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0554011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05510Os.49377.1.S1_at11/111+2610474..2619994expressed protein
LOC_Os01g05520Os.30995.1.S1_at11/111+2626176..2626852expressed protein
LOC_Os01g05530Os.38086.2.S1_x_at11/111+2629420..2634632expressed protein
LOC_Os01g05530Os.38086.1.S1_at8/111+2629420..2634632expressed protein
LOC_Os01g05540OsAffx.10922.1.S1_at11/111+2637802..2641467expressed protein
LOC_Os01g05540Os.38296.1.S1_at10/111+2637802..2641467expressed protein
LOC_Os01g05550OsAffx.10565.2.A1_at11/111+2647936..2648391expressed protein
LOC_Os01g05560Os.6138.1.S1_at10/111+2649467..2652437expressed protein
LOC_Os01g05570Os.6138.2.S1_at8/111+2657624..2658103hypothetical protein
LOC_Os01g05580OsAffx.26236.1.S1_at3/111+2660341..2660874expressed protein
LOC_Os01g05590Os.35005.2.S1_at11/111+2663306..2664587retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10922.1.S1_at--524--8891Chr01:2640188..2640212 (25 bp)
TGAGTAAGCCCCTTTGTCACATCTA
LOC_Os01g05540
OsAffx.10922.1.S1_at--527--431Chr01:2640168..2640192 (25 bp)
ATCTAGTCCCTGGAGTCAATGGATT
LOC_Os01g05540
OsAffx.10922.1.S1_at--434--10791Chr01:2640132..2640156 (25 bp)
TTGATTTCTTGCACTGCCTGTTTAT
LOC_Os01g05540
OsAffx.10922.1.S1_at--679--4471Chr01:2640117..2640141 (25 bp)
GCCTGTTTATTTACAACTGCAACCA
LOC_Os01g05540
OsAffx.10922.1.S1_at--77--411Chr01:2640062..2640086 (25 bp)
ATCATGGATTAACACCTTAGCACGG
LOC_Os01g05540
OsAffx.10922.1.S1_at--1160--5091Chr01:2640043..2640067 (25 bp)
GCACGGTACTGCTACAATGTATGTC
LOC_Os01g05540
OsAffx.10922.1.S1_at--929--6911Chr01:2639997..2640021 (25 bp)
GTATGTTTGACATTGCTATGCCTGT
LOC_Os01g05540
OsAffx.10922.1.S1_at--1040--3691Chr01:2639982..2640006 (25 bp)
CTATGCCTGTTATTGATTTGCGATA
LOC_Os01g05540
OsAffx.10922.1.S1_at--1073--7371Chr01:2639957..2639981 (25 bp)
GTGACCACATAGACCTTGTCTTCAT
LOC_Os01g05540
OsAffx.10922.1.S1_at--456--9851Chr01:2639883..2639907 (25 bp)
TAAATTGCCCAGAGCTGTCTTTTTT
LOC_Os01g05540
OsAffx.10922.1.S1_at--392--2711Chr01:2639832..2639856 (25 bp)
AAGCTTCTCATATGTTAGTTCTGTA
LOC_Os01g05540
Target Sequence 
TGAGTAAGCCCCTTTGTCACATCTAGTCCCTGGAGTCAATGGATTGTGGATTTCATTTGATTTCTTGCACTGCCTGTTTA
TTTACAACTGCAACCATAAAGCATCTATAAGATGACATTACTGCTAATCATGGATTAACACCTTAGCACGGTACTGCTAC
AATGTATGTCAGGATTGTTGGTTCGGGGTGTGTATGTTTGACATTGCTATGCCTGTTATTGATTTGCGATAGTGACCACA
TAGACCTTGTCTTCATAATACTGAAGATAAATATCAATACTGGCTTTAGTTTATATAAGACGACATAAATTGCCCAGAGC
TGTCTTTTTTTTTTTTTGATTTTTAGTTTTTTTAGGAAGCTTCTCATATGTTAGTTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis