Browse Element(s) Details


Os.49377.1.S1_at

Description gb:AK067134.1
DB_XREF= gi:32977152
TID=Os.49377.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49377 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013094H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094H22, full insert sequence.
FL= gb:AK067134.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0551011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05490Os.22886.1.A1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05490Os.12602.1.S1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05500Os.7837.1.S1_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.46048.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.7837.1.S1_s_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500OsAffx.10921.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05510Os.49377.1.S1_at11/111+2610474..2619994expressed protein
LOC_Os01g05520Os.30995.1.S1_at11/111+2626176..2626852expressed protein
LOC_Os01g05530Os.38086.2.S1_x_at11/111+2629420..2634632expressed protein
LOC_Os01g05530Os.38086.1.S1_at8/111+2629420..2634632expressed protein
LOC_Os01g05540OsAffx.10922.1.S1_at11/111+2637802..2641467expressed protein
LOC_Os01g05540Os.38296.1.S1_at10/111+2637802..2641467expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49377.1.S1_at--595--3771Chr01:2611405..2611429 (25 bp)
CTCTCTTGCTCTCTGTACTAAATTT
LOC_Os01g05510
Os.49377.1.S1_at--709--6291Chr01:2611231..2611255 (25 bp)
GATGATCCAGAGTATCGTGCGTCTA
LOC_Os01g05510
Os.49377.1.S1_at--459--1211Chr01:2611148..2611172 (25 bp)
AGTTACCTACTGTGGCGATTCTCGG
LOC_Os01g05510
Os.49377.1.S1_at--1137--8071Chr01:2610800..2611143 (25 bp)
GGACCTATCTGGTGCAAGGCTTTTT
LOC_Os01g05510
Os.49377.1.S1_at--13--5991Chr01:2610739..2610763 (25 bp)
GAGACCCACGTGTAATTTTCCAATG
LOC_Os01g05510
Os.49377.1.S1_at--362--2271Chr01:2610708..2610732 (25 bp)
AAATGCTTTGTCACCCGAAGCCTAA
LOC_Os01g05510
Os.49377.1.S1_at--232--3151Chr01:2610671..2610695 (25 bp)
AATTAACCACTGTGCGCTTTGTGCT
LOC_Os01g05510
Os.49377.1.S1_at--33--10351Chr01:2610637..2610661 (25 bp)
TTATAAACGTTCTGACTCCTGTCTC
LOC_Os01g05510
Os.49377.1.S1_at--635--1251Chr01:2610604..2610628 (25 bp)
AGATTCCCTGCAAGGTTTCGCGGTT
LOC_Os01g05510
Os.49377.1.S1_at--598--391Chr01:2610541..2610565 (25 bp)
ATCAGTCTTTTCTCCGTGTTGTTAA
LOC_Os01g05510
Os.49377.1.S1_at--181--3911Chr01:2610513..2610537 (25 bp)
CTGGATGCCGGGACACTTGTTATAT
LOC_Os01g05510
Target Sequence 
CTCTCTTGCTCTCTGTACTAAATTTTCTACTCTGTAGAGCTGCCTATCTCATGTCCCAGTCTTCTTTGCACAGTCAAAAT
ATCAGATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAGAGATGACGATTGTGCCATATGTGC
CAGATACAGTTACCTACTGTGGCGATTCTCGGTGATGGACCTATCTGGTGCAAGGCTTTTTTGATGTGAAATATTTCTGG
AGCTGTCAACGAGACCTGAGACCCACGTGTAATTTTCCAATGAGAACAAAATGCTTTGTCACCCGAAGCCTAATGTAGGA
GTATAAATTAACCACTGTGCGCTTTGTGCTCATGTATGTTTATAAACGTTCTGACTCCTGTCTCACGCGTTCAGATTCCC
TGCAAGGTTTCGCGGTTCTGTTGCTGCGCGAACTGTTCATAACTTTTATTGTATGATCAGTCTTTTCTCCGTGTTGTTAA
TGGCTGGATGCCGGGACACTTGTTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis