Browse Element(s) Details


OsAffx.10921.1.S1_x_at

Description tigr:9629.m00474
TID=OsAffx.10921.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=zinc finger in N-recognin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0550011/11zinc finger in N-recognin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05460OsAffx.23031.1.S1_s_at11/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.2.S1_at8/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_at7/111+2572385..2575012hypothetical protein
LOC_Os01g05460Os.12614.1.A1_at1/111+2572385..2575012hypothetical protein
LOC_Os01g05470Os.18514.1.S1_at11/111+2576367..2580377XS domain containing protein, expressed
LOC_Os01g05480Os.31681.1.S1_at11/111+2581788..2584497ternary complex factor MIP1, putative, expressed
LOC_Os01g05490Os.22886.1.A1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05490Os.12602.1.S1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05500Os.7837.1.S1_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.46048.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.7837.1.S1_s_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500OsAffx.10921.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05510Os.49377.1.S1_at11/111+2610474..2619994expressed protein
LOC_Os01g05520Os.30995.1.S1_at11/111+2626176..2626852expressed protein
LOC_Os01g05530Os.38086.2.S1_x_at11/111+2629420..2634632expressed protein
LOC_Os01g05530Os.38086.1.S1_at8/111+2629420..2634632expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10921.1.S1_x_at--386--1731Chr01:2607508..2607531 (24 bp)
ACCTTGACGCCTTCGGTGAGGAGGA
LOC_Os01g05500
OsAffx.10921.1.S1_x_at--487--671Chr01:2608221..2608245 (25 bp)
ATGACATGCACAGAGGAAAGCCTTT
LOC_Os01g05500
OsAffx.10921.1.S1_x_at--1036--5551Chr01:2608236..2608260 (25 bp)
GAAAGCCTTTGTATCTAAGCCAAGA
LOC_Os01g05500
OsAffx.10921.1.S1_x_at--580--2751Chr01:2608257..2608281 (25 bp)
AAGAAAGATACGCAGCCCTCACATA
LOC_Os01g05500
OsAffx.10921.1.S1_x_at--389--1671Chr01:2608270..2608379 (25 bp)
AGCCCTCACATATCTGGTGGCATCT
LOC_Os01g05500
OsAffx.10921.1.S1_x_at--978--7531Chr01:2608371..2608395 (25 bp)
GTGGCATCTCACAGCCTTGACAGGA
LOC_Os01g05500
OsAffx.10921.1.S1_x_at--756--4431Chr01:2608384..2608408 (25 bp)
GCCTTGACAGGACTTCTGAAGTACT
LOC_Os01g05500
OsAffx.10921.1.S1_x_at--928--10091Chr01:2608409..2608433 (25 bp)
TAGGCAGACAACCATCAGCATTTAT
LOC_Os01g05500
OsAffx.10921.1.S1_x_at--20--9591Chr01:2609328..2609352 (25 bp)
TCTTGTCCAGGCGTGCCATGGTTAT
LOC_Os01g05500
OsAffx.10921.1.S1_x_at--856--6471Chr01:2609386..2609410 (25 bp)
GATACTTTTCTTTTTGTTGATGACT
LOC_Os01g05500
OsAffx.10921.1.S1_x_at--578--9891Chr01:2609424..2609448 (25 bp)
TACTTTTCGCATTCGATGTCTGGAT
LOC_Os01g05500
Target Sequence 
ACCTTGACGCCTTCGGTGAGGAGGATCATGACATGCACAGAGGAAAGCCTTTGTATCTAAGCCAAGAAAGATACGCAGCC
CTCACATATCTGGTGGCATCTCACAGCCTTGACAGGACTTCTGAAGTACTTAGGCAGACAACCATCAGCATTTATGGATC
TGATTGAGTGCAGTGTGCTGTGGGACAATATCCAAAGGATCTTGTGATGTGAATATTTTCTGGAGCTGTGCGGATGCAAT
TTGGGATCAATGCTTTTTAATGGTAACAACGCTTCCTCACACAAGNNNNNNNNNNNNNNNNNCTCTCTTGTCCAGGCGTG
CCATGGTTATGCAATGGTGGTTGCGCAAACTGTACAGTGATCAGATACTTTTCTTTTTGTTGATGACTTGGATAAATAAT
CTACTTTTCGCATTCGATGTCTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10921.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis