Browse Element(s) Details


OsAffx.23031.2.S1_at

Description tigr:9629.m00469
TID=OsAffx.23031.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g054608/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05400OsAffx.10917.1.S1_at11/111+2547748..2548923hypothetical protein
LOC_Os01g05410OsAffx.22782.1.S1_x_at11/111+2550422..2550823hypothetical protein
LOC_Os01g05420Os.54683.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05420Os.16530.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05430OsAffx.23124.2.S1_s_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05430OsAffx.23124.1.S1_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05440OsAffx.22780.1.S1_x_at11/111+2566874..2568799XH domain containing protein, expressed
LOC_Os01g05450OsAffx.22779.1.S1_at11/111+2569851..2571003hypothetical protein
LOC_Os01g05450OsAffx.23031.1.S1_s_at1/111+2569851..2571003hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_s_at11/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.2.S1_at8/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_at7/111+2572385..2575012hypothetical protein
LOC_Os01g05460Os.12614.1.A1_at1/111+2572385..2575012hypothetical protein
LOC_Os01g05470Os.18514.1.S1_at11/111+2576367..2580377XS domain containing protein, expressed
LOC_Os01g05480Os.31681.1.S1_at11/111+2581788..2584497ternary complex factor MIP1, putative, expressed
LOC_Os01g05490Os.22886.1.A1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05490Os.12602.1.S1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05500Os.7837.1.S1_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.46048.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.7837.1.S1_s_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500OsAffx.10921.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23031.2.S1_at--702--6091Chr01:2574948..2574972 (25 bp)
GAGTCACCGACGAAGCCAAGCTGTG
LOC_Os01g05460
OsAffx.23031.2.S1_at--1047--7091Chr01:2574948..2574970 (23 bp)
GTCACCGACGAAGCCAAGCTGTGTA
LOC_Os01g05460
OsAffx.23031.2.S1_at--561--5791NONE
GACGAAGCCAAGCTGTGTAATTTGA
NONE
OsAffx.23031.2.S1_at--50--4391NONE
CCAAGCTGTGTAATTTGATGGAACA
NONE
OsAffx.23031.2.S1_at--419--2711NONE
AAGAAGACTACAAAACCACCCAGAG
NONE
OsAffx.23031.2.S1_at--239--5611Chr01:2572457..2572477 (21 bp)
GACTACAAAACCACCCAGAGTTGCA
LOC_Os01g05460
OsAffx.23031.2.S1_at--258--2371Chr01:2572450..2572474 (25 bp)
AAACCACCCAGAGTTGCAAGGCGCT
LOC_Os01g05460
OsAffx.23031.2.S1_at--1146--4171Chr01:2572444..2572468 (25 bp)
CCCAGAGTTGCAAGGCGCTGCAGAT
LOC_Os01g05460
OsAffx.23031.2.S1_at--684--4131Chr01:2572429..2572453 (25 bp)
CGCTGCAGATGGTGCGAGGAATATA
LOC_Os01g05460
OsAffx.23031.2.S1_at--223--9151Chr01:2572417..2572441 (25 bp)
TGCGAGGAATATACGACCCACGACT
LOC_Os01g05460
OsAffx.23031.2.S1_at--335--4051Chr01:2572415..2572439 (25 bp)
CGAGGAATATACGACCCACGACTAC
LOC_Os01g05460
Target Sequence 
GAGTCACCGACGAAGCCAAGCTGTGTAATTTGATGGAACAGGAAGTTTCTGAAGATGAATATGTTCAGGTTGGTGGAGTG
CTGGAAAGAAGGAAGAGGAAAGCAACCGTGACACCTGGCAAGCTGCAGATTTCTAAAATTGAGACACCTCATAAGCTGCA
GATTTCTGAAGTTCAGACGCCTCATAAGCTGCAGATTTCTGAAGTTGAGACACCTCATCAGCTGCAGATTTCTGAAGTTG
AAATCAAGAGCAAAGAAGTTCAAGCTCTTGTGCTGGCTCAGGATTCTCAAAGGATCTCTCAAGAGAATGAGAATCTGAGG
TTGCAGCTCGCTCTCAAGACAAAGGAGCTCGAGCATGAAGAGAATCAGAAGCTCAGGTTACAGTTGGAGCTGAAGAACAA
GGACATTGAATCCCTGAAAAAGCAGAATGATGAACTGAAAGCTGAGATCGAGTACTACAAGAAGACTACAAAACCACCCA
GAGTTGCAAGGCGCTGCAGATGGTGCGAGGAATATACGACCCACGACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23031.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis