Browse Element(s) Details


OsAffx.23031.1.S1_s_at

Description gb:NM_184352.1
DB_XREF= gi:34895783
GEN=P0434B04.7
TID=OsAffx.23031.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0434B04.7 (P0434B04.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0546011/11hypothetical protein
LOC_Os01g054501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05400OsAffx.10917.1.S1_at11/111+2547748..2548923hypothetical protein
LOC_Os01g05410OsAffx.22782.1.S1_x_at11/111+2550422..2550823hypothetical protein
LOC_Os01g05420Os.54683.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05420Os.16530.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05430OsAffx.23124.2.S1_s_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05430OsAffx.23124.1.S1_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05440OsAffx.22780.1.S1_x_at11/111+2566874..2568799XH domain containing protein, expressed
LOC_Os01g05450OsAffx.22779.1.S1_at11/111+2569851..2571003hypothetical protein
LOC_Os01g05450OsAffx.23031.1.S1_s_at1/111+2569851..2571003hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_s_at11/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.2.S1_at8/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_at7/111+2572385..2575012hypothetical protein
LOC_Os01g05460Os.12614.1.A1_at1/111+2572385..2575012hypothetical protein
LOC_Os01g05470Os.18514.1.S1_at11/111+2576367..2580377XS domain containing protein, expressed
LOC_Os01g05480Os.31681.1.S1_at11/111+2581788..2584497ternary complex factor MIP1, putative, expressed
LOC_Os01g05490Os.22886.1.A1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05490Os.12602.1.S1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05500Os.7837.1.S1_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.46048.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.7837.1.S1_s_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500OsAffx.10921.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23031.1.S1_s_at--99--8152Chr01:2574085..2574109 (25 bp)
GGAAAGCAACCGTGACACCTGGCAA
LOC_Os01g05460
OsAffx.23031.1.S1_s_at--1021--5631Chr01:2574072..2574096 (25 bp)
GACACCTGGCAAGCTGCAGATTTCT
LOC_Os01g05460
OsAffx.23031.1.S1_s_at--155--5991Chr01:2574041..2574065 (25 bp)
GAGACACCTCATAAGCTGCAGATTT
LOC_Os01g05460
OsAffx.23031.1.S1_s_at--631--9471Chr01:2574017..2574041 (25 bp)
TCTGAAGTTCAGACGCCTCATAAGC
LOC_Os01g05460
OsAffx.23031.1.S1_s_at--218--5811Chr01:2574006..2574030 (25 bp)
GACGCCTCATAAGCTGCAGATTTCT
LOC_Os01g05460
OsAffx.23031.1.S1_s_at--882--10751Chr01:2573977..2574001 (25 bp)
TTGAGACACCTCATCAGCTGCAGAT
LOC_Os01g05460
OsAffx.23031.1.S1_s_at--1090--5331Chr01:2573843..2573951 (25 bp)
GAAGTTCAAGCTCTTGTGCTGGCTC
LOC_Os01g05460
OsAffx.23031.1.S1_s_at--449--7311Chr01:2573828..2573852 (25 bp)
GTGCTGGCTCAGGATTCTCAAAGGA
LOC_Os01g05460
OsAffx.23031.1.S1_s_at--24--5971Chr01:2573789..2573813 (25 bp)
GAGAATCTGAGGTTGCAGCTCGCTC
LOC_Os01g05460
OsAffx.23031.1.S1_s_at--94--10751Chr01:2573777..2573801 (25 bp)
TTGCAGCTCGCTCTCAAGACAAAGG
LOC_Os01g05460
OsAffx.23031.1.S1_s_at--189--5251Chr01:2573736..2573760 (25 bp)
GAATCAGAAGCTCAGGTTACAGTTG
LOC_Os01g05460
Target Sequence 
GGAAAGCAACCGTGACACCTGGCAAGCTGCAGATTTCTAAAATTGAGACACCTCATAAGCTGCAGATTTCTGAAGTTCAG
ACGCCTCATAAGCTGCAGATTTCTGAAGTTGAGACACCTCATCAGCTGCAGATTTCTGAAGTTGAAATCAAGAGCAAAGA
AGTTCAAGCTCTTGTGCTGGCTCAGGATTCTCAAAGGATCTCTCAAGAGAATGAGAATCTGAGGTTGCAGCTCGCTCTCA
AGACAAAGGAGCTCGAGCATGAAGAGAATCAGAAGCTCAGGTTACAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23031.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis