Browse Element(s) Details


Os.18514.1.S1_at

Description gb:AK066686.1
DB_XREF= gi:32976704
TID=Os.18514.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18514 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434B04.8 (P0434B04.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070L04, full insert sequence.
FL= gb:AK066686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0547011/11XS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05420Os.54683.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05420Os.16530.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05430OsAffx.23124.2.S1_s_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05430OsAffx.23124.1.S1_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05440OsAffx.22780.1.S1_x_at11/111+2566874..2568799XH domain containing protein, expressed
LOC_Os01g05450OsAffx.22779.1.S1_at11/111+2569851..2571003hypothetical protein
LOC_Os01g05450OsAffx.23031.1.S1_s_at1/111+2569851..2571003hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_s_at11/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.2.S1_at8/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_at7/111+2572385..2575012hypothetical protein
LOC_Os01g05460Os.12614.1.A1_at1/111+2572385..2575012hypothetical protein
LOC_Os01g05470Os.18514.1.S1_at11/111+2576367..2580377XS domain containing protein, expressed
LOC_Os01g05480Os.31681.1.S1_at11/111+2581788..2584497ternary complex factor MIP1, putative, expressed
LOC_Os01g05490Os.22886.1.A1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05490Os.12602.1.S1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05500Os.7837.1.S1_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.46048.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.7837.1.S1_s_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500OsAffx.10921.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18514.1.S1_at--699--6311Chr01:2576910..2576934 (25 bp)
GATGACGACACGAAGCTGCGGCACT
LOC_Os01g05470
Os.18514.1.S1_at--459--4771Chr01:2576896..2576920 (25 bp)
GCTGCGGCACTTGTGGATCGAGTAC
LOC_Os01g05470
Os.18514.1.S1_at--153--8671Chr01:2576861..2576885 (25 bp)
TGTGCAATGCAGTGAAGACCGCCCT
LOC_Os01g05470
Os.18514.1.S1_at--1065--9191Chr01:2576815..2576839 (25 bp)
TGCCAGTGGACGGTATGTTGTGCCC
LOC_Os01g05470
Os.18514.1.S1_at--479--6151Chr01:2576748..2576772 (25 bp)
GAGGTGCTCAAGTACATCTTTGGAC
LOC_Os01g05470
Os.18514.1.S1_at--896--2771Chr01:2576609..2576633 (25 bp)
AAGAGCTGCTGCCTTCTGTTATCAT
LOC_Os01g05470
Os.18514.1.S1_at--933--8771Chr01:2576593..2576617 (25 bp)
TGTTATCATCTCAGGTCAGGTTGGA
LOC_Os01g05470
Os.18514.1.S1_at--449--8391Chr01:2576568..2576592 (25 bp)
GGCGCTGGTCAATTGATGGGTCTAA
LOC_Os01g05470
Os.18514.1.S1_at--430--831Chr01:2576517..2576541 (25 bp)
ATGGATGCCCATAAGGCTGTGCCAA
LOC_Os01g05470
Os.18514.1.S1_at--26--8351Chr01:2576503..2576527 (25 bp)
GGCTGTGCCAATCCTTAGTTATAAT
LOC_Os01g05470
Os.18514.1.S1_at--533--5591Chr01:2576448..2576472 (25 bp)
GAAATAATCCTGTGTTGTGTCCCTT
LOC_Os01g05470
Target Sequence 
GATGACGACACGAAGCTGCGGCACTTGTGGATCGAGTACGGTGACGATGTGTGCAATGCAGTGAAGACCGCCCTGAGCGA
GGTCAATGAGTACAATGCCAGTGGACGGTATGTTGTGCCCGAGCTGTGGAACTTCAGGAAAGGCCGAAAGGCGACAATGA
AGGAGGTGCTCAAGTACATCTTTGGACAGATAGAGACAACCAGCAAGCGCAGGAGGCCGTGAAGTTCGTCCTTCGATGGA
TGAAGAAGCTGACAGGCAAGCGAAGGATGGNNTTTGAGGTNGCTGGGTATTGGTNCTAGGTATCAAGAGCTGCTGCCTTC
TGTTATCATCTCAGGTCAGGTTGGAGGCGCTGGTCAATTGATGGGTCTAAGTTGATGAATACTAGTGTATTGATCAATGG
ATGCCCATAAGGCTGTGCCAATCCTTAGTTATAATGATTATGGTTATGGTCAGTGTCAGGCTGTAGAAATAATCCTGTGT
TGTGTCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis