Browse Element(s) Details


Os.31681.1.S1_at

Description gb:AK106926.1
DB_XREF= gi:32992135
TID=Os.31681.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434B04.9 (P0434B04.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-B10, full insert sequence.
FL= gb:AK106926.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0548011/11ternary complex factor MIP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05420Os.54683.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05420Os.16530.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05430OsAffx.23124.2.S1_s_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05430OsAffx.23124.1.S1_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05440OsAffx.22780.1.S1_x_at11/111+2566874..2568799XH domain containing protein, expressed
LOC_Os01g05450OsAffx.22779.1.S1_at11/111+2569851..2571003hypothetical protein
LOC_Os01g05450OsAffx.23031.1.S1_s_at1/111+2569851..2571003hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_s_at11/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.2.S1_at8/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_at7/111+2572385..2575012hypothetical protein
LOC_Os01g05460Os.12614.1.A1_at1/111+2572385..2575012hypothetical protein
LOC_Os01g05470Os.18514.1.S1_at11/111+2576367..2580377XS domain containing protein, expressed
LOC_Os01g05480Os.31681.1.S1_at11/111+2581788..2584497ternary complex factor MIP1, putative, expressed
LOC_Os01g05490Os.22886.1.A1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05490Os.12602.1.S1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05500Os.7837.1.S1_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.46048.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.7837.1.S1_s_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500OsAffx.10921.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31681.1.S1_at--995--9091Chr01:2582282..2582306 (25 bp)
TGCTCGAGTGGATCTACAGCCAGCT
LOC_Os01g05480
Os.31681.1.S1_at--153--6151Chr01:2582157..2582181 (25 bp)
GAGGTGGAGCCTTACAGCGCCGAAT
LOC_Os01g05480
Os.31681.1.S1_at--1082--3811Chr01:2582124..2582148 (25 bp)
CTGCTGCCACTCTGATGCGATGAAC
LOC_Os01g05480
Os.31681.1.S1_at--1078--10311Chr01:2582086..2582110 (25 bp)
TTTCTTCTCCTTGCATGCAGCATTG
LOC_Os01g05480
Os.31681.1.S1_at--935--5051Chr01:2582070..2582094 (25 bp)
GCAGCATTGCTACGTACGGCTTTGA
LOC_Os01g05480
Os.31681.1.S1_at--943--1251Chr01:2582045..2582069 (25 bp)
AGATATTCTGTTATTTCGCCGCGTA
LOC_Os01g05480
Os.31681.1.S1_at--461--4511Chr01:2582028..2582052 (25 bp)
GCCGCGTATACCAACGTGTACATCG
LOC_Os01g05480
Os.31681.1.S1_at--178--7451Chr01:2582013..2582037 (25 bp)
GTGTACATCGTTGCAAGTGACTAAT
LOC_Os01g05480
Os.31681.1.S1_at--388--571Chr01:2581927..2581951 (25 bp)
ATCCAACGATGTGCAGCCATTTTAG
LOC_Os01g05480
Os.31681.1.S1_at--479--10811Chr01:2581892..2581916 (25 bp)
TTGTAGTATGACTGATACTCCCTCC
LOC_Os01g05480
Os.31681.1.S1_at--727--411Chr01:2581802..2581826 (25 bp)
ATCATCCTGAGTTAAGATCCCCTAT
LOC_Os01g05480
Target Sequence 
TGCTCGAGTGGATCTACAGCCAGCTCCCCGGCCGGTCGTCGTCGACGGGGCAGCTCAAGCGCACCATCAGGGAGCTCCTC
GGCGCCTCCGGCGCCGGTGGCAAGGCGGCGGTGGCGAAGGCGGTGGAGGTGGAGCCTTACAGCGCCGAATTCCACTACCT
GCTGCCACTCTGATGCGATGAACCTCTGATGATGAGTTTCTTCTCCTTGCATGCAGCATTGCTACGTACGGCTTTGAAGA
TATTCTGTTATTTCGCCGCGTATACCAACGTGTACATCGTTGCAAGTGACTAATCTAGTCAATCAAACAAATAAATTTAG
TGAAGTATATATAGTTCAATTTTCCCCCCTACTGAATCCAACGATGTGCAGCCATTTTAGAAGTTAGTAGTTGTAGTATG
ACTGATACTCCCTCCATCCATCCCAAAATGTTTTGGGGGAGTAATTGTTAGAAGGAAAAATTGCAAAAATGTACCTCAAT
ATCATCCTGAGTTAAGATCCCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis