Browse Element(s) Details


Os.30995.1.S1_at

Description gb:AK108014.1
DB_XREF= gi:32993223
TID=Os.30995.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434B04.14 (P0434B04.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-H08, full insert sequence.
FL= gb:AK108014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0552011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05500Os.7837.1.S1_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.46048.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.7837.1.S1_s_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500OsAffx.10921.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05510Os.49377.1.S1_at11/111+2610474..2619994expressed protein
LOC_Os01g05520Os.30995.1.S1_at11/111+2626176..2626852expressed protein
LOC_Os01g05530Os.38086.2.S1_x_at11/111+2629420..2634632expressed protein
LOC_Os01g05530Os.38086.1.S1_at8/111+2629420..2634632expressed protein
LOC_Os01g05540OsAffx.10922.1.S1_at11/111+2637802..2641467expressed protein
LOC_Os01g05540Os.38296.1.S1_at10/111+2637802..2641467expressed protein
LOC_Os01g05550OsAffx.10565.2.A1_at11/111+2647936..2648391expressed protein
LOC_Os01g05560Os.6138.1.S1_at10/111+2649467..2652437expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30995.1.S1_at--1049--2311Chr01:2626262..2626286 (25 bp)
AAAGTACTCCATGCCGAGGGACGCG
LOC_Os01g05520
Os.30995.1.S1_at--163--9451Chr01:2626350..2626374 (25 bp)
TCGGAGAGGTCAACACGGAGCTCGT
LOC_Os01g05520
Os.30995.1.S1_at--112--10711Chr01:2626416..2626440 (25 bp)
TTGCGGCAGGCATTGCGGGCCATCT
LOC_Os01g05520
Os.30995.1.S1_at--59--7251Chr01:2626445..2626469 (25 bp)
GTCGCCTACACTTGTTGGTGGCTAG
LOC_Os01g05520
Os.30995.1.S1_at--43--8431Chr01:2626499..2626523 (25 bp)
GGCCGATGAGTTCGCAGGCATCATA
LOC_Os01g05520
Os.30995.1.S1_at--286--931Chr01:2626514..2626538 (25 bp)
AGGCATCATAGAGCTCGTCATCGGA
LOC_Os01g05520
Os.30995.1.S1_at--779--5271Chr01:2626545..2626569 (25 bp)
GAAGGCGATATTGCCCACGAAGCCT
LOC_Os01g05520
Os.30995.1.S1_at--258--4011Chr01:2626640..2626664 (25 bp)
CGTCGGCCCTCGCAAATAAGATGGA
LOC_Os01g05520
Os.30995.1.S1_at--345--2791Chr01:2626657..2626681 (25 bp)
AAGATGGAGACCCATATGCCTATGG
LOC_Os01g05520
Os.30995.1.S1_at--610--3491Chr01:2626813..2626837 (25 bp)
CATGTACTTTTTTCAACTTTAGCCT
LOC_Os01g05520
Os.30995.1.S1_at--902--2031Chr01:2626828..2626852 (25 bp)
ACTTTAGCCTTAGTGCCAAGTTCTC
LOC_Os01g05520
Target Sequence 
AAAGTACTCCATGCCGAGGGACGCGGCGTGGACGGCGTCCTCCATGCTGACGGGCTCGCGGTGGCTGCGGCGCCTGCTGC
TGGGGCGGTCGGAGAGGTCAACACGGAGCTCGTGGCCCGGCTGAAGGAGGCCGCGCAGGAGGTAGCCGTGGAGGTTGCGG
CAGGCATTGCGGGCCATCTCTTCGTCGCCTACACTTGTTGGTGGCTAGGTCGGCGGCGAGGCAGAGGGAATGGACGGGGC
CGATGAGTTCGCAGGCATCATAGAGCTCGTCATCGGAGGCGTCGAAGGCGATATTGCCCACGAAGCCTCCGGTTCTCCCC
GCCTATCGCCGGCAGTGCTCCTCCCCCGTCGTCCGTCCGCCGCACCGGATTTCCTTCCCGTCGGCCCTCGCAAATAAGAT
GGAGACCCATATGCCTATGGGACCCACGTGGGTCCCACATTGACCCACGTCGAACAAAACAAAAACAAAGCCACATTATA
AGTTGAGGAATGTCATACATTGGTTTTTTGGTTTAGGAATGATTTTGTAATTCGGTGAAAGACGAGGGTCGCATGTACTT
TTTTCAACTTTAGCCTTAGTGCCAAGTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis