Browse Element(s) Details


OsAffx.10565.2.A1_at

Description tigr:9629.m00481
TID=OsAffx.10565.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0555011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05520Os.30995.1.S1_at11/111+2626176..2626852expressed protein
LOC_Os01g05530Os.38086.2.S1_x_at11/111+2629420..2634632expressed protein
LOC_Os01g05530Os.38086.1.S1_at8/111+2629420..2634632expressed protein
LOC_Os01g05540OsAffx.10922.1.S1_at11/111+2637802..2641467expressed protein
LOC_Os01g05540Os.38296.1.S1_at10/111+2637802..2641467expressed protein
LOC_Os01g05550OsAffx.10565.2.A1_at11/111+2647936..2648391expressed protein
LOC_Os01g05560Os.6138.1.S1_at10/111+2649467..2652437expressed protein
LOC_Os01g05570Os.6138.2.S1_at8/111+2657624..2658103hypothetical protein
LOC_Os01g05580OsAffx.26236.1.S1_at3/111+2660341..2660874expressed protein
LOC_Os01g05590Os.35005.2.S1_at11/111+2663306..2664587retrotransposon protein, putative, LINE subclass
LOC_Os01g05600Os.33469.1.S2_at3/111+2666754..2669726NBS-LRR disease resistance protein, putative
LOC_Os01g05610Os.19803.4.S1_at10/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05610OsAffx.10929.1.S1_x_at7/111+2671203..2672174Histone H2B.2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10565.2.A1_at--899--5791Chr01:2648293..2648317 (25 bp)
GACGCACGCGTCTTGCTCAAGGCAG
LOC_Os01g05550
OsAffx.10565.2.A1_at--631--5871Chr01:2648260..2648284 (25 bp)
GAGCCTGGCGGATGGCGACGACAAT
LOC_Os01g05550
OsAffx.10565.2.A1_at--1108--4351Chr01:2648159..2648183 (25 bp)
CCACGTCGTCATCGATGCTAAGTGC
LOC_Os01g05550
OsAffx.10565.2.A1_at--191--3551Chr01:2648150..2648174 (25 bp)
CATCGATGCTAAGTGCGATCGGGTC
LOC_Os01g05550
OsAffx.10565.2.A1_at--808--9431Chr01:2648132..2648156 (25 bp)
TCGGGTCGAGCATATGTGGATTTGT
LOC_Os01g05550
OsAffx.10565.2.A1_at--1108--8651Chr01:2648118..2648142 (25 bp)
TGTGGATTTGTTCGGATTCGCCCTT
LOC_Os01g05550
OsAffx.10565.2.A1_at--168--10611Chr01:2648108..2648132 (25 bp)
TTCGGATTCGCCCTTGTCGTCGTCG
LOC_Os01g05550
OsAffx.10565.2.A1_at--384--9411Chr01:2648092..2648116 (25 bp)
TCGTCGTCGATCTGACTCACTCGGA
LOC_Os01g05550
OsAffx.10565.2.A1_at--260--6411Chr01:2648084..2648108 (25 bp)
GATCTGACTCACTCGGACCTCCTTG
LOC_Os01g05550
OsAffx.10565.2.A1_at--165--3811Chr01:2648066..2648090 (25 bp)
CTCCTTGCCTAGTTCGTCGTCGACG
LOC_Os01g05550
OsAffx.10565.2.A1_at--943--9391Chr01:2648050..2648074 (25 bp)
TCGTCGACGTTTCCCTCGCCGGGAG
LOC_Os01g05550
Target Sequence 
GACGCACGCGTCTTGCTCAAGGCAGCAAATGATGAGCCTGGCGGATGGCGACGACAATGCCGGGGACCTGTCGGTGCTCG
TCCGGGCGAGGACGTCCAGTGGCGCGGCGCAGCAGAAGGCGGAGGCTGGCGGCGCCACGTCGTCATCGATGCTAAGTGCG
ATCGGGTCGAGCATATGTGGATTTGTTCGGATTCGCCCTTGTCGTCGTCGATCTGACTCACTCGGACCTCCTTGCCTAGT
TCGTCGTCGACGTTTCCCTCGCCGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10565.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis