Browse Element(s) Details


Os.6138.2.S1_at

Description gb:NM_184366.1
DB_XREF= gi:34895821
GEN=P0434B04.21
TID=Os.6138.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434B04.21 (P0434B04.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0434B04.21 (P0434B04.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g055708/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05530Os.38086.2.S1_x_at11/111+2629420..2634632expressed protein
LOC_Os01g05530Os.38086.1.S1_at8/111+2629420..2634632expressed protein
LOC_Os01g05540OsAffx.10922.1.S1_at11/111+2637802..2641467expressed protein
LOC_Os01g05540Os.38296.1.S1_at10/111+2637802..2641467expressed protein
LOC_Os01g05550OsAffx.10565.2.A1_at11/111+2647936..2648391expressed protein
LOC_Os01g05560Os.6138.1.S1_at10/111+2649467..2652437expressed protein
LOC_Os01g05570Os.6138.2.S1_at8/111+2657624..2658103hypothetical protein
LOC_Os01g05580OsAffx.26236.1.S1_at3/111+2660341..2660874expressed protein
LOC_Os01g05590Os.35005.2.S1_at11/111+2663306..2664587retrotransposon protein, putative, LINE subclass
LOC_Os01g05600Os.33469.1.S2_at3/111+2666754..2669726NBS-LRR disease resistance protein, putative
LOC_Os01g05610Os.19803.4.S1_at10/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05610OsAffx.10929.1.S1_x_at7/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05620Os.33469.1.S2_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05620Os.33469.1.S1_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6138.2.S1_at--397--4471Chr01:2657553..2657577 (25 bp)
GCCGACGCTGTGAGGCCCCTTGCTG
NONE
Os.6138.2.S1_at--413--31Chr01:2657587..2657611 (25 bp)
ATTGGAACCCTACCAGACGCTGCTT
NONE
Os.6138.2.S1_at--19--3431Chr01:2657600..2657624 (25 bp)
CAGACGCTGCTTGGGCCTTCGACGA
NONE
Os.6138.2.S1_at--983--2911Chr01:2657758..2657782 (25 bp)
AAGGACGGCGCCACACCGTTGTGCT
LOC_Os01g05570
Os.6138.2.S1_at--1154--10811Chr01:2657776..2657800 (25 bp)
TTGTGCTGTCCCCATGCTAGCAATC
LOC_Os01g05570
Os.6138.2.S1_at--921--7711Chr01:2657848..2657872 (25 bp)
GGTGGTCACCCCAAATCCTCTGGCG
LOC_Os01g05570
Os.6138.2.S1_at--373--571Chr01:2657862..2657886 (25 bp)
ATCCTCTGGCGCGATGTTACAGACG
LOC_Os01g05570
Os.6138.2.S1_at--747--4551Chr01:2657870..2657894 (25 bp)
GCGCGATGTTACAGACGTCGTCTCG
LOC_Os01g05570
Os.6138.2.S1_at--95--4591Chr01:2657905..2657929 (25 bp)
GCGCACCCTGGGTCGTTCTAGTGCA
LOC_Os01g05570
Os.6138.2.S1_at--404--6731Chr01:2657919..2657943 (25 bp)
GTTCTAGTGCATCCGCCCGTGGTGA
LOC_Os01g05570
Os.6138.2.S1_at--677--9531Chr01:2657989..2658013 (25 bp)
TCTACTTGTCTGTGAGGCTGTGCCA
LOC_Os01g05570
Target Sequence 
GCCGACGCTGTGAGGCCCCTTGCTGCCTCCCACCATTGGAACCCTACCAGACGCTGCTTGGGCCTTCGACGATGGGGATG
ACGAGAAGGAGGACGACGCCGCACCGCTGTGCTATCCCCGTGCTGACAACCTCCACGCCGCTCGTCCTCAAAGACGCCGA
CCTTCTCCCCATCGACAGCGGCGGCTACCCCAAATCCTCCCTATCAAGGACGGCGCCACACCGTTGTGCTGTCCCCATGC
TAGCAATCTCCACGCCGCTCGTCCTTGACGACGCCGACCTCCTCCCCACGACAGCGGTGGTCACCCCAAATCCTCTGGCG
CGATGTTACAGACGTCGTCTCGCGTCTTCGCCGCGCACCCTGGGTCGTTCTAGTGCATCCGCCCGTGGTGACGACGCTCC
TCCTTTTCATCTCCCTCGTCGTCCTCCACTCCCACCTCTACTTGTCTGTGAGGCTGTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6138.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis