Browse Element(s) Details


Os.35005.2.S1_at

Description gb:NM_184369.1
DB_XREF= gi:34895827
GEN=P0434B04.24
TID=Os.35005.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35005 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434B04.24 (P0434B04.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0434B04.24 (P0434B04.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0559011/11retrotransposon protein, putative, LINE subclass
LOC_Os08g241907/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05540OsAffx.10922.1.S1_at11/111+2637802..2641467expressed protein
LOC_Os01g05540Os.38296.1.S1_at10/111+2637802..2641467expressed protein
LOC_Os01g05550OsAffx.10565.2.A1_at11/111+2647936..2648391expressed protein
LOC_Os01g05560Os.6138.1.S1_at10/111+2649467..2652437expressed protein
LOC_Os01g05570Os.6138.2.S1_at8/111+2657624..2658103hypothetical protein
LOC_Os01g05580OsAffx.26236.1.S1_at3/111+2660341..2660874expressed protein
LOC_Os01g05590Os.35005.2.S1_at11/111+2663306..2664587retrotransposon protein, putative, LINE subclass
LOC_Os01g05600Os.33469.1.S2_at3/111+2666754..2669726NBS-LRR disease resistance protein, putative
LOC_Os01g05610Os.19803.4.S1_at10/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05610OsAffx.10929.1.S1_x_at7/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05620Os.33469.1.S2_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05620Os.33469.1.S1_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05630Os.19803.4.S1_at9/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05630OsAffx.10929.1.S1_x_at7/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05640OsAffx.22770.3.S1_x_at11/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.1.S1_x_at2/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.4.S1_at1/111+2685425..2688744Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35005.2.S1_at--275--2791Chr01:2664001..2664025 (25 bp)
AAGAGATCTTTCGATCCGTCGCTGA
LOC_Os01g05590
Os.35005.2.S1_at--343--4252Chr12:13682793..13682852 (25 bp)
CCGTCGCTGAGCACATCATTGGTGA
NONE
Os.35005.2.S1_at--457--7732Chr08:14469635..14469659 (25 bp)
GGTGGACACACAGTTTTGGACAGAC
LOC_Os08g24190
Os.35005.2.S1_at--410--10873Chr12:13682871..13682895 (25 bp)
TTGGACAGACAATTGGACAGGGAAA
NONE
Os.35005.2.S1_at--922--8513Chr12:13682884..13682908 (25 bp)
TGGACAGGGAAAGGTTGCTTCGCCT
NONE
Os.35005.2.S1_at--406--6133Chr12:13682910..13682934 (25 bp)
GAGGTGGCCGGTGTTGTTTTCCCAT
NONE
Os.35005.2.S1_at--69--8693Chr12:13682934..13682958 (25 bp)
TGTGAGCCGTGCCAAGCTGACAGTA
NONE
Os.35005.2.S1_at--922--4753Chr12:13682949..13682973 (25 bp)
GCTGACAGTAGCTGATGCCCTGATT
NONE
Os.35005.2.S1_at--474--4753Chr12:13682959..13682983 (25 bp)
GCTGATGCCCTGATTGCTAACAGAT
NONE
Os.35005.2.S1_at--679--2491Chr01:2664165..2664189 (25 bp)
AACAGATGGATTCGCCGATTACAAG
LOC_Os01g05590
Os.35005.2.S1_at--239--9231Chr01:2664381..2664405 (25 bp)
TCCAGGGTGTCGTCGCGTGTTCGCT
LOC_Os01g05590
Target Sequence 
AAGAGATCTTTCGATCCGTCGCTGAGCACATCATTGGTGATGGGGTGGACACACAGTTTTGGACAGACAATTGGACAGGG
AAAGGTTGCTTCGCCTGGAGGTGGCCGGTGTTGTTTTCCCATGTGAGCCGTGCCAAGCTGACAGTAGCTGATGCCCTGAT
TGCTAACAGATGGATTCGCCGATTACAAGGTGCCCTGTCCAATGAAGCTCTGGGTGAATTCTTCCAACTTTGGGATGAAG
TTCGCGACGTGTCACTGCAGCAGATGGCTGACACGATCAAATGGAAGTTGACTGCTGATGGTAATTTCTCAGTGGCCTCG
GCGTATGATCTATTTTTCATAGCGACAGAGGACTGTTCCTACGGGGACACGCTGTGGCACTCCAGGGTGTCGTCGCGTGT
TCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35005.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis