Browse Element(s) Details


OsAffx.20523.1.S1_at

Description tigr:9638.m01540
TID=OsAffx.20523.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1847011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18410OsAffx.18289.1.S1_at10/1110+9030786..9031094hypothetical protein
LOC_Os10g18420OsAffx.30226.2.S1_x_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.2.S1_s_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.442.1.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.4.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_x_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.24587.1.S1_x_at1/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18430OsAffx.18290.1.S1_at11/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18430OsAffx.10096.1.S1_x_at1/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18440OsAffx.20524.1.S1_at11/1110+9038319..9042196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18450OsAffx.30829.1.A1_at11/1110+9045662..9046599expressed protein
LOC_Os10g18460OsAffx.18291.1.S1_at9/1110+9049931..9050919hypothetical protein
LOC_Os10g18470OsAffx.20523.1.S1_x_at11/1110+9052638..9053192expressed protein
LOC_Os10g18470OsAffx.20523.1.S1_at11/1110+9052638..9053192expressed protein
LOC_Os10g18480Os.25230.2.A1_at4/1110+9054309..9055175Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os10g18490NANA10+9057750..9058355Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os10g18500OsAffx.6691.1.S1_at11/1110+9059072..9059563hypothetical protein
LOC_Os10g18510NANA10+9061841..9064122UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os10g18520NANA10+9064903..9065118hypothetical protein
LOC_Os10g18530NANA10+9068364..9069065Cytokinin-O-glucosyltransferase 2, putative
LOC_Os10g18540Os.10731.2.A1_at1/1110+9071664..9073920retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18550Os.27066.1.A1_x_at1/1110+9076666..9079862expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20523.1.S1_at--502--4531Chr10:9053125..9053149 (25 bp)
GCCCCACATGGCAGCGTCAGGAGGC
LOC_Os10g18470
OsAffx.20523.1.S1_at--370--2731Chr10:9053099..9053123 (25 bp)
AAGCACCGGCAGAGCCAGCTCCGTG
LOC_Os10g18470
OsAffx.20523.1.S1_at--298--1591Chr10:9053083..9053107 (25 bp)
AGCTCCGTGGCAACCTCAACGTGGA
LOC_Os10g18470
OsAffx.20523.1.S1_at--195--9271Chr10:9052979..9053003 (25 bp)
TCCTGCAACAGCCAGGCTGACAGGC
LOC_Os10g18470
OsAffx.20523.1.S1_at--505--4571Chr10:9052910..9052934 (25 bp)
GCGCGCGGGCAGAGCTTCGCGTCGT
LOC_Os10g18470
OsAffx.20523.1.S1_at--668--4491Chr10:9052867..9052891 (25 bp)
GCCGGTCCGGTGACTTCCAGTACGA
LOC_Os10g18470
OsAffx.20523.1.S1_at--929--7791Chr10:9052864..9052888 (25 bp)
GGTCCGGTGACTTCCAGTACGACGC
LOC_Os10g18470
OsAffx.20523.1.S1_at--179--7371Chr10:9052858..9052882 (25 bp)
GTGACTTCCAGTACGACGCCCGCAG
LOC_Os10g18470
OsAffx.20523.1.S1_at--1014--9331Chr10:9052771..9052795 (25 bp)
TCGCCGCCGGTGACACGCTCAAGTA
LOC_Os10g18470
OsAffx.20523.1.S1_at--538--4491Chr10:9052766..9052790 (25 bp)
GCCGGTGACACGCTCAAGTACCGGT
LOC_Os10g18470
OsAffx.20523.1.S1_at--791--8231Chr10:9052670..9052694 (25 bp)
GGCAACAGCGCCAAAGACAGTCAGA
LOC_Os10g18470
Target Sequence 
GCCCCACATGGCAGCGTCAGGAGGCCAAGCACCGGCAGAGCCAGCTCCGTGGCAACCTCAACGTGGAGGTCCCCGTCGCC
GCCCCCACCGGCTGCTTCGCCGGCTGCTTCCGCCCGTCGCCGACCTCCTCCCGATCGTCGCCCCCGTCCTGCAACAGCCA
GGCTGACAGGCCGGCGTCCCCGTCGCTGATCCGGTCGCCGTCGGCGTGGATCCGCGCGCGCGGGCAGAGCTTCGCGTCGT
CGGCGCGGCACGCGCGCCGCCGGTCCGGTGACTTCCAGTACGACGCCCGCAGCTACGCGCGCAACTTCGACGAGGGCACC
GACGGCGAGGCGAGCGGCGACGAGCAGGCCGGGCTCGCCGCCGGTGACACGCTCAAGTACCGGTCCTTCGCGTCCAGGCT
CCCCCCGTCGCCCACGCCCGCGCTGTCGCCGTCCGCTGCGCCGGTGTGCGACGGGGGCAACAGCGCCAAAGACAGTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis