Browse Element(s) Details


Os.24019.1.S1_at

Description gb:AK102047.1
DB_XREF= gi:32987256
TID=Os.24019.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24019 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082A02, full insert sequence.
FL= gb:AK061593.1 gb:AK102047.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g357209/11Microsomal signal peptidase 25 kDa subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35660OsAffx.12363.1.S1_at10/112+21430680..21433485Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g35670OsAffx.30226.2.S1_s_at11/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_x_at3/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.30226.2.S1_x_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35680OsAffx.24587.1.S1_x_at11/112+21440709..21441186hypothetical protein
LOC_Os02g35690Os.18021.1.S1_at11/112+21443732..21445471expressed protein
LOC_Os02g35700Os.5448.1.S1_at11/112+21447255..21450023Nucleoside diphosphate kinase family protein, expressed
LOC_Os02g35710NANA2+21452107..21452475hypothetical protein
LOC_Os02g35720Os.24019.1.S1_at9/112+21456409..21458639Microsomal signal peptidase 25 kDa subunit family protein, expressed
LOC_Os02g35730NANA2+21462415..21462882hypothetical protein
LOC_Os02g35740NANA2+21464575..21465267hypothetical protein
LOC_Os02g35750Os.52706.1.S1_at11/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35750Os.52706.2.S1_at11/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35750Os.48048.1.A1_at10/112+21465862..21469764Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g35760Os.53416.1.S1_at11/112+21468864..21471763Protein kinase domain containing protein, expressed
LOC_Os02g35770Os.2362.1.S1_a_at11/112+21481741..21484025Homeobox domain containing protein, expressed
LOC_Os02g35770Os.2362.2.S1_x_at11/112+21481741..21484025Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009003molecular_functionsignal peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24019.1.S1_at--635--9711Chr02:21458166..21458190 (25 bp)
TCAACGTGGCGCTGCAGATCGTTAC
LOC_Os02g35720
Os.24019.1.S1_at--678--4111NONE
CCCTCCCGCGGGATCATTTAATAGG
NONE
Os.24019.1.S1_at--371--6431Chr02:21457302..21457326 (25 bp)
GATCATTTAATAGGACTGGGCTTGT
LOC_Os02g35720
Os.24019.1.S1_at--1144--8111Chr02:21457290..21457314 (25 bp)
GGACTGGGCTTGTTATATCTTCAAA
LOC_Os02g35720
Os.24019.1.S1_at--310--5671Chr02:21457249..21457273 (25 bp)
GACATGTATACCCTCACAATAGCAA
LOC_Os02g35720
Os.24019.1.S1_at--540--3071Chr02:21457206..21457230 (25 bp)
AATCTTCCAGTGAACCAGTCCATTT
LOC_Os02g35720
Os.24019.1.S1_at--455--8731NONE
TGTCACAAAATGGTTCACCAAGGAT
NONE
Os.24019.1.S1_at--350--6731Chr02:21456670..21456694 (25 bp)
GTTCTTGTGGAAGGTTTGTTCTGGA
LOC_Os02g35720
Os.24019.1.S1_at--483--5571Chr02:21456594..21456618 (25 bp)
GAAAGGATAGCTTGTACTTATTGAT
LOC_Os02g35720
Os.24019.1.S1_at--843--3571Chr02:21456515..21456539 (25 bp)
CATATGACTAGCAAGGAATCGCTTT
LOC_Os02g35720
Os.24019.1.S1_at--769--2111Chr02:21456448..21456472 (25 bp)
ACATGTCCTGGTATTAACTGCTGAA
LOC_Os02g35720
Target Sequence 
TCAACGTGGCGCTGCAGATCGTTACNTACACCAAGGAGAAGAACGCCATCCTCTTCACGTACCCTCCCGCGGGATCATTT
AATAGGACTGGGCTTGTTATATCTTCAAANTTNACCAAGATTGTCAGACATGTATACCCTCACAATAGCAAGTGCAGATC
CACANTCTAAATCTTCCAGTGAACCAGTCCATTTCACNAAGAGTGTCACAAAATGGTTCACCAAGGATGGGGTTCTTGTG
GAAGGTTTGTTCTGGAAGGATGTTGAGAAACTGATTGATGACTANAACAGTGACCACAGGAGCAAATGAAAGGATAGCTT
GTACTTATTGATATCAATATNTCATGAAACAACCAACCATTCNCCTNCTACATCTGTTAGTTTTTNCATATGACTAGCAA
GGAATCGCTTTATAAAATCAAANCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCTGGTATTAACTGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis