Browse Element(s) Details


Os.17728.1.S1_at

Description gb:AK102754.1
DB_XREF= gi:32987963
TID=Os.17728.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17728 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033106P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106P12, full insert sequence.
FL= gb:AK102754.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3586010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35820Os.52284.1.S1_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35820Os.55663.1.S1_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35820Os.52284.2.S1_x_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35830Os.16973.1.S1_at11/112+21520020..21523069expressed protein
LOC_Os02g35840Os.7921.1.S1_at11/112+21523733..21526921expressed protein
LOC_Os02g35849OsAffx.13875.1.S1_at2/112+21530597..21532263NA
LOC_Os02g35860Os.17728.1.S1_at10/112+21537741..21542976expressed protein
LOC_Os02g35870OsAffx.2874.1.S1_at11/112+21544431..21548848Avr9 elicitor response protein, putative, expressed
LOC_Os02g35880Os.17332.1.S1_at10/112+21552995..21554882expressed protein
LOC_Os02g35890OsAffx.12365.1.S1_at11/112+21555979..21557399expressed protein
LOC_Os02g35890Os.12762.1.S1_at11/112+21555979..21557399expressed protein
LOC_Os02g35900Os.13927.1.S1_at11/112+21557610..21560696thioredoxin family protein, putative, expressed
LOC_Os02g35910Os.22480.1.S1_at10/112+21563419..21568280protein phosphatase 2C, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17728.1.S1_at--137--7271Chr02:21542413..21542437 (25 bp)
GTCCATGGAAGACAATGCCAACATC
LOC_Os02g35860
Os.17728.1.S1_at--593--4391Chr02:21542429..21542453 (25 bp)
GCCAACATCAAGATCGTTCTCCTGT
LOC_Os02g35860
Os.17728.1.S1_at--155--6731Chr02:21542444..21542468 (25 bp)
GTTCTCCTGTATATCTATTCGGGCA
LOC_Os02g35860
Os.17728.1.S1_at--17--7651Chr02:21542540..21542564 (25 bp)
GGGAGTAAGGCCACAGTAGCTATCT
LOC_Os02g35860
Os.17728.1.S1_at--27--6631Chr02:21542609..21542633 (25 bp)
GTTGGTTTTGTTTGGATGCTGAGAA
LOC_Os02g35860
Os.17728.1.S1_at--459--10871Chr02:21542654..21542678 (25 bp)
TTGGCCTGAATTTTGTCTTAGATTA
LOC_Os02g35860
Os.17728.1.S1_at--809--4291NONE
CCTCTATTGAGGCTTGTCCAGCAAT
NONE
Os.17728.1.S1_at--1065--6511Chr02:21542792..21542816 (25 bp)
GATTTGTCGTCTTTTTCCCAGGAAT
LOC_Os02g35860
Os.17728.1.S1_at--428--7051Chr02:21542825..21542849 (25 bp)
GTAAGTCCGGTTATTGGAGGCGCAT
LOC_Os02g35860
Os.17728.1.S1_at--188--5011Chr02:21542846..21542870 (25 bp)
GCATGGCTGTGCTGTCCTTTAAAAA
LOC_Os02g35860
Os.17728.1.S1_at--634--3651Chr02:21542892..21542916 (25 bp)
CTTCTCAGGGCTTATCTTTGTTTTG
LOC_Os02g35860
Target Sequence 
GTCCATGGAAGACAATGCCAACATCAAGATCGTTCTCCTGTATATCTATTCGGGCANGAGGGCTGGATAAGGAGCTGATG
AAGCCTAACGCAGGGGATAAAAACNATGCTTGAAGAACGCNGGTGCTAGGGAGTAAGGCCACAGTAGCTATCTGCNAAAA
NAATGCATTGCCAATCACACATCAGTGAGCNATTGGGCGTTGGTTTTGTTTGGATGCTGAGAAGACAGGTAGCANAAGGG
AGTCTTGGCCTGAATTTTGTCTTAGATTAACAAGTCAAGATTATTTTTTTTCCTCTATTGAGGCTTGTCCAGCAATTTGG
GGAGGTGGGGGTTCNACTGGTAGCTCTGACNATTTTTTGCTTGATAAAACANGAGGAAGTTTAGGATTTGTCGTCTTTTT
CCCAGGAATACCNNANAATGTAAGTCCGGTTATTGGAGGCGCATGGCTGTGCTGTCCTTTAAAAAGAATAGGTTCAAGTT
TTCCCCCTTCTCAGGGCTTATCTTTGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis