Browse Element(s) Details


Os.22480.1.S1_at

Description gb:AK069840.1
DB_XREF= gi:32979864
TID=Os.22480.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22480 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034F02, full insert sequence.
FL= gb:AK069840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3591010/11protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35860Os.17728.1.S1_at10/112+21537741..21542976expressed protein
LOC_Os02g35870OsAffx.2874.1.S1_at11/112+21544431..21548848Avr9 elicitor response protein, putative, expressed
LOC_Os02g35880Os.17332.1.S1_at10/112+21552995..21554882expressed protein
LOC_Os02g35890OsAffx.12365.1.S1_at11/112+21555979..21557399expressed protein
LOC_Os02g35890Os.12762.1.S1_at11/112+21555979..21557399expressed protein
LOC_Os02g35900Os.13927.1.S1_at11/112+21557610..21560696thioredoxin family protein, putative, expressed
LOC_Os02g35910Os.22480.1.S1_at10/112+21563419..21568280protein phosphatase 2C, putative, expressed
LOC_Os02g35920OsAffx.2875.1.S1_at11/112+21574785..21575216hypothetical protein
LOC_Os02g35930OsAffx.12366.1.S1_at9/112+21576520..21577673hypothetical protein
LOC_Os02g35940Os.54566.1.S1_at11/112+21581898..215831482-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os02g35950Os.8331.1.S1_at11/112+21590776..21596641RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22480.1.S1_at--1114--2851Chr02:21563868..21563892 (25 bp)
AAGTGAGAAGCTCGTTGTCTTTGAC
LOC_Os02g35910
Os.22480.1.S1_at--897--9991Chr02:21563838..21563862 (25 bp)
TAGCTTCATACCCAGCAGCTTTACT
LOC_Os02g35910
Os.22480.1.S1_at--888--10471Chr02:21563719..21563743 (25 bp)
TTACTGACCGTATAGAGCACTGATG
LOC_Os02g35910
Os.22480.1.S1_at--427--3091Chr02:21563694..21563718 (25 bp)
AATAGCAACGGCATTGTGATTCTTA
LOC_Os02g35910
Os.22480.1.S1_at--213--2931NONE
AAGGCCGACCTTGATTCGTGGTCGA
NONE
Os.22480.1.S1_at--615--10551Chr02:21563603..21563627 (25 bp)
TTCATTCCTGTTGAAGTCCAGCCTT
LOC_Os02g35910
Os.22480.1.S1_at--659--3371Chr02:21563585..21563609 (25 bp)
CAGCCTTTCCTTAACTCCAATGTAA
LOC_Os02g35910
Os.22480.1.S1_at--400--6571Chr02:21563546..21563701 (25 bp)
GATTCTTTCAAACTGCTGTGATTAA
LOC_Os02g35910
Os.22480.1.S1_at--716--5171Chr02:21563518..21563542 (25 bp)
GCAAGACACATCTCATTGACCTGTA
LOC_Os02g35910
Os.22480.1.S1_at--657--5651Chr02:21563467..21563491 (25 bp)
GACAGATATGTTTCTCCAACCTGAC
LOC_Os02g35910
Os.22480.1.S1_at--491--4371Chr02:21563452..21563476 (25 bp)
CCAACCTGACCTGTAGCTACTGTTG
LOC_Os02g35910
Target Sequence 
AAGTGAGAAGCTCGTTGTCTTTGACNCTGCTAGCTTCATACCCAGCAGCTTTACTNTCATTNTTTTGNCCATGATGGCAT
CTACATGTTGAAAGATGATCCATGAAGACTGGTATGACATGTNTATTNTGAGGTCAACTAAATTGTGAATTACTGACCGT
ATAGAGCACTGATGAATAGCAACGGCATTGTGATTCTTAATTAGGACTAGATGACTACATCAATATTTTTTTTTTAAGGC
CGACCTTGATTCGTGGTCGAAAAATATTCATTCCTGTTGAAGTCCAGCCTTTCCTTAACTCCAATGTAATTAGCATCGGA
ACAGATTCTTTCAAACTGCTGTGATTAATCAGCAAGACACATCTCATTGACCTGTATACAATGTACAGAATCTTGCTAAC
TAGACAGATATGTTTCTCCAACCTGACCTGTAGCTACTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis