Browse Element(s) Details


Os.54566.1.S1_at

Description gb:AK105793.1
DB_XREF= gi:32991002
TID=Os.54566.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H09, full insert sequence.
FL= gb:AK105793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3594011/112-Hydroxyisoflavanone dehydratase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35890OsAffx.12365.1.S1_at11/112+21555979..21557399expressed protein
LOC_Os02g35890Os.12762.1.S1_at11/112+21555979..21557399expressed protein
LOC_Os02g35900Os.13927.1.S1_at11/112+21557610..21560696thioredoxin family protein, putative, expressed
LOC_Os02g35910Os.22480.1.S1_at10/112+21563419..21568280protein phosphatase 2C, putative, expressed
LOC_Os02g35920OsAffx.2875.1.S1_at11/112+21574785..21575216hypothetical protein
LOC_Os02g35930OsAffx.12366.1.S1_at9/112+21576520..21577673hypothetical protein
LOC_Os02g35940Os.54566.1.S1_at11/112+21581898..215831482-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os02g35950Os.8331.1.S1_at11/112+21590776..21596641RNA recognition motif family protein, expressed
LOC_Os02g35960OsAffx.2876.1.S1_at10/112+21599686..21601352hypothetical protein
LOC_Os02g35970NANA2+21602296..21607403transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54566.1.S1_at--239--4571Chr02:21582580..21582604 (25 bp)
GCGCGGTGCTGATCCACCCCTGGTT
LOC_Os02g35940
Os.54566.1.S1_at--47--5911Chr02:21582933..21582957 (25 bp)
GAGCTGCTCGACAGGATGGTCACCT
LOC_Os02g35940
Os.54566.1.S1_at--16--6231Chr02:21582947..21582971 (25 bp)
GATGGTCACCTTCGTTAACGGCGCC
LOC_Os02g35940
Os.54566.1.S1_at--871--5791Chr02:21582978..21583002 (25 bp)
GACGCCGCGTGATCTCCGAGTTAGC
LOC_Os02g35940
Os.54566.1.S1_at--356--8851Chr02:21582987..21583011 (25 bp)
TGATCTCCGAGTTAGCGGCCGCGCG
LOC_Os02g35940
Os.54566.1.S1_at--511--4151Chr02:21583006..21583030 (25 bp)
CGCGCGCCATTGTTTTTGCTTTTGC
LOC_Os02g35940
Os.54566.1.S1_at--1084--8771Chr02:21583016..21583040 (25 bp)
TGTTTTTGCTTTTGCGTGTGCGAAA
LOC_Os02g35940
Os.54566.1.S1_at--115--9892Chr02:21583050..21583074 (25 bp)
TACTTTGATTTGATGAACTCTGCCA
LOC_Os02g35940
Os.54566.1.S1_at--912--8971Chr02:21583063..21583087 (25 bp)
TGAACTCTGCCAAGCTGTGATTGAA
LOC_Os02g35940
Os.54566.1.S1_at--476--831Chr02:21583104..21583128 (25 bp)
ATGGTTGCTGATGCATAATGTGTTA
LOC_Os02g35940
Os.54566.1.S1_at--122--9771Chr02:21583119..21583143 (25 bp)
TAATGTGTTAATGAAATGCCCGAAT
LOC_Os02g35940
Target Sequence 
GCGCGGTGCTGATCCACCCCTGGTTCTGGGGCTCGGAGGCCGTCGGCGAGGAGGCCCCCGACCCCGAGGGGCGCGCCAGG
GGCGCCGGGCTGTGGGTGTACGCGTGCCCGGGCACCACCGGCATGGACGACCCGCGGATGAACCCCATGGCGCCCGGCGC
GCCGCCGCTGGGGCGGATGGCGTGCGACCGGGTCATGGTGTGCGCCGCGGAGGGGGACTTCCTCAGGTGGCGCGCCCACG
CGTACGCCGCCGCGGTGGCCGCGGCGAAGGGCGGCGCGGCGGTGGAGGTGCTGGAGACGGCCGGGGCGGGCCACGTCTTC
CACCTGTTCGACCCCGACGGCGACAAGGCCAAGGAGCTGCTCGACAGGATGGTCACCTTCGTTAACGGCGCCGGCGCCGA
CGCCGCGTGATCTCCGAGTTAGCGGCCGCGCGCCATTGTTTTTGCTTTTGCGTGTGCGAAAAAAATTCCCTACTTTGATT
TGATGAACTCTGCCAAGCTGTGATTGAATAAATGTGTGATTTTTATGGTTGCTGATGCATAATGTGTTAATGAAATGCCC
GAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis