Browse Element(s) Details


OsAffx.12365.1.S1_at

Description tigr:9630.m03421
TID=OsAffx.12365.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3589011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35849OsAffx.13875.1.S1_at2/112+21530597..21532263NA
LOC_Os02g35860Os.17728.1.S1_at10/112+21537741..21542976expressed protein
LOC_Os02g35870OsAffx.2874.1.S1_at11/112+21544431..21548848Avr9 elicitor response protein, putative, expressed
LOC_Os02g35880Os.17332.1.S1_at10/112+21552995..21554882expressed protein
LOC_Os02g35890OsAffx.12365.1.S1_at11/112+21555979..21557399expressed protein
LOC_Os02g35890Os.12762.1.S1_at11/112+21555979..21557399expressed protein
LOC_Os02g35900Os.13927.1.S1_at11/112+21557610..21560696thioredoxin family protein, putative, expressed
LOC_Os02g35910Os.22480.1.S1_at10/112+21563419..21568280protein phosphatase 2C, putative, expressed
LOC_Os02g35920OsAffx.2875.1.S1_at11/112+21574785..21575216hypothetical protein
LOC_Os02g35930OsAffx.12366.1.S1_at9/112+21576520..21577673hypothetical protein
LOC_Os02g35940Os.54566.1.S1_at11/112+21581898..215831482-Hydroxyisoflavanone dehydratase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12365.1.S1_at--168--4031Chr02:21557152..21557176 (25 bp)
CGTTCCTAGATTTGGTCGGCACCAA
LOC_Os02g35890
OsAffx.12365.1.S1_at--1133--8591Chr02:21557140..21557164 (25 bp)
TGGTCGGCACCAATCGATCGATCCA
LOC_Os02g35890
OsAffx.12365.1.S1_at--781--6391Chr02:21557125..21557149 (25 bp)
GATCGATCCATCCTACCATATGAGA
LOC_Os02g35890
OsAffx.12365.1.S1_at--1087--9971Chr02:21557112..21557136 (25 bp)
TACCATATGAGATTTAGTTCCCTAA
LOC_Os02g35890
OsAffx.12365.1.S1_at--462--10351Chr02:21557100..21557124 (25 bp)
TTTAGTTCCCTAATCATGCGTCCGT
LOC_Os02g35890
OsAffx.12365.1.S1_at--191--9611Chr02:21557087..21557111 (25 bp)
TCATGCGTCCGTCCTGCAATTGGTT
LOC_Os02g35890
OsAffx.12365.1.S1_at--813--5191Chr02:21557072..21557096 (25 bp)
GCAATTGGTTCGATTTCCTGAGCTA
LOC_Os02g35890
OsAffx.12365.1.S1_at--482--9271Chr02:21557058..21557081 (24 bp)
TCCTGAGCTATCTGTTGGGTGCCGA
LOC_Os02g35890
OsAffx.12365.1.S1_at--60--7711Chr02:21556774..21557065 (25 bp)
GGGTGCCGATGTGCTTCAAATTGAC
LOC_Os02g35890
OsAffx.12365.1.S1_at--426--51Chr02:21556755..21556779 (25 bp)
ATTGACCGTGTTTGCTGTAAAATTC
LOC_Os02g35890
OsAffx.12365.1.S1_at--782--2991Chr02:21556630..21556731 (25 bp)
AATGATCTTCAGGAGCACTATGACA
LOC_Os02g35890
Target Sequence
CGTTCCTAGATTTGGTCGGCACCAATCGATCGATCCATCCTACCATATGAGATTTAGTTCCCTAATCATGCGTCCGTCCT
GCAATTGGTTCGATTTCCTGAGCTATCTGTTGGGTGCCGATGTGCTTCAAATTGACCGTGTTTGCTGTAAAATTCAAATT
AAATCTATAGTACAGATGAATGATCTTCAGGAGCACTATGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis