Browse Element(s) Details


OsAffx.2875.1.S1_at

Description tigr:9630.m03424
TID=OsAffx.2875.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3592011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35880Os.17332.1.S1_at10/112+21552995..21554882expressed protein
LOC_Os02g35890OsAffx.12365.1.S1_at11/112+21555979..21557399expressed protein
LOC_Os02g35890Os.12762.1.S1_at11/112+21555979..21557399expressed protein
LOC_Os02g35900Os.13927.1.S1_at11/112+21557610..21560696thioredoxin family protein, putative, expressed
LOC_Os02g35910Os.22480.1.S1_at10/112+21563419..21568280protein phosphatase 2C, putative, expressed
LOC_Os02g35920OsAffx.2875.1.S1_at11/112+21574785..21575216hypothetical protein
LOC_Os02g35930OsAffx.12366.1.S1_at9/112+21576520..21577673hypothetical protein
LOC_Os02g35940Os.54566.1.S1_at11/112+21581898..215831482-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os02g35950Os.8331.1.S1_at11/112+21590776..21596641RNA recognition motif family protein, expressed
LOC_Os02g35960OsAffx.2876.1.S1_at10/112+21599686..21601352hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2875.1.S1_at--84--1371Chr02:21574860..21574884 (25 bp)
AGAGCGGTGCCGACTGGCAGCATGA
LOC_Os02g35920
OsAffx.2875.1.S1_at--739--1511Chr02:21574878..21574902 (25 bp)
AGCATGACCGGCAGCGATCGCGGAG
LOC_Os02g35920
OsAffx.2875.1.S1_at--779--891Chr02:21574901..21574925 (25 bp)
AGGCGACGACGACACAATCAAAGAT
LOC_Os02g35920
OsAffx.2875.1.S1_at--214--9711Chr02:21574918..21574942 (25 bp)
TCAAAGATGAAGATCCGGCGGCAGA
LOC_Os02g35920
OsAffx.2875.1.S1_at--768--6371Chr02:21574929..21574953 (25 bp)
GATCCGGCGGCAGAGACAACCATGT
LOC_Os02g35920
OsAffx.2875.1.S1_at--177--5991Chr02:21574941..21574965 (25 bp)
GAGACAACCATGTGCGGAACGGAGA
LOC_Os02g35920
OsAffx.2875.1.S1_at--384--5451Chr02:21574957..21574981 (25 bp)
GAACGGAGAGGTATCCGCCGCGCTC
LOC_Os02g35920
OsAffx.2875.1.S1_at--663--4111Chr02:21575062..21575086 (25 bp)
CGCATTGGCCGGATTTGGCCGTTAA
LOC_Os02g35920
OsAffx.2875.1.S1_at--332--10732Chr02:21575076..21575100 (25 bp)
TTGGCCGTTAATGAAGAGCTCACCT
LOC_Os02g35920
OsAffx.2875.1.S1_at--1014--7571Chr02:21575145..21575169 (25 bp)
GGGCTGGACAGAACGCTGACAAACA
LOC_Os02g35920
OsAffx.2875.1.S1_at--1075--1431Chr02:21575154..21575178 (25 bp)
AGAACGCTGACAAACAGGGTGGAGC
LOC_Os02g35920
Target Sequence 
AGAGCGGTGCCGACTGGCAGCATGACCGGCAGCGATCGCGGAGGCGACGACGACACAATCAAAGATGAAGATCCGGCGGC
AGAGACAACCATGTGCGGAACGGAGAGGTATCCGCCGCGCTCGTCCCCCACCCCAGCCTCACATGCTCCCGCGTCGGCTC
GCCGCTGCCGCCGATGTCGTCGAGCGCTCGAGCGGCGGGAGCCGCATTGGCCGGATTTGGCCGTTAATGAAGAGCTCACC
TCCACCGCCGCACCTTCACTTCTGGGGAAGGGGGCATTGCGGGCGGGGCTGGACAGAACGCTGACAAACAGGGTGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis