Browse Element(s) Details


OsAffx.2874.1.S1_at

Description tigr:9630.m03419
TID=OsAffx.2874.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Avr9 elicitor response protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3587011/11Avr9 elicitor response protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35830Os.16973.1.S1_at11/112+21520020..21523069expressed protein
LOC_Os02g35840Os.7921.1.S1_at11/112+21523733..21526921expressed protein
LOC_Os02g35849OsAffx.13875.1.S1_at2/112+21530597..21532263NA
LOC_Os02g35860Os.17728.1.S1_at10/112+21537741..21542976expressed protein
LOC_Os02g35870OsAffx.2874.1.S1_at11/112+21544431..21548848Avr9 elicitor response protein, putative, expressed
LOC_Os02g35880Os.17332.1.S1_at10/112+21552995..21554882expressed protein
LOC_Os02g35890OsAffx.12365.1.S1_at11/112+21555979..21557399expressed protein
LOC_Os02g35890Os.12762.1.S1_at11/112+21555979..21557399expressed protein
LOC_Os02g35900Os.13927.1.S1_at11/112+21557610..21560696thioredoxin family protein, putative, expressed
LOC_Os02g35910Os.22480.1.S1_at10/112+21563419..21568280protein phosphatase 2C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2874.1.S1_at--221--6551Chr02:21545395..21545419 (25 bp)
GATTTTCTTCTCTACAGCAGTTGGT
LOC_Os02g35870
OsAffx.2874.1.S1_at--1091--2511Chr02:21545241..21545346 (25 bp)
AACTTAGGAATGCTTGCCACTACCC
LOC_Os02g35870
OsAffx.2874.1.S1_at--685--7971Chr02:21545181..21545205 (25 bp)
GGATGCATGAAGTCAGGCCCAGTTC
LOC_Os02g35870
OsAffx.2874.1.S1_at--816--891Chr02:21545170..21545191 (22 bp)
AGGCCCAGTTCTCGCTGACAAGAAT
LOC_Os02g35870
OsAffx.2874.1.S1_at--920--2251Chr02:21545009..21545033 (25 bp)
AAATACTTCCGTCATGCTACTGGGC
LOC_Os02g35870
OsAffx.2874.1.S1_at--508--6531Chr02:21544974..21544998 (25 bp)
GATTTCAAAAGACCTCGCGACCTAC
LOC_Os02g35870
OsAffx.2874.1.S1_at--160--9891Chr02:21544876..21544976 (25 bp)
TACATTTCAATCAACCAGCCTATCT
LOC_Os02g35870
OsAffx.2874.1.S1_at--64--1431Chr02:21544777..21544801 (25 bp)
AGAAACATGTGCTGCGGGACTCCAC
LOC_Os02g35870
OsAffx.2874.1.S1_at--192--2691Chr02:21544642..21544666 (25 bp)
AAGCTGGCAATGTCTGTGTGGCGTC
LOC_Os02g35870
OsAffx.2874.1.S1_at--1125--7531Chr02:21544625..21544649 (25 bp)
GTGGCGTCTTTCGATTGGAGCTGCA
LOC_Os02g35870
OsAffx.2874.1.S1_at--671--8191Chr02:21544572..21544593 (22 bp)
GGAAGTACATGCTCGATGCGGTCAT
LOC_Os02g35870
Target Sequence 
GATTTTCTTCTCTACAGCAGTTGGTATTTGGGATGCTGACTTTTATGTGAAGGTTGATGATGATGTGCATGTGAACTTAG
GAATGCTTGCCACTACCCTTGCTCGGCATAAATCAAAACCAAGAACGTATATTGGATGCATGAAGTCAGGCCCAGTTCTC
GCTGACAAGAATGTGAAGTACCATGAACCTGAGTACTGGAAATTTGGGGAGGAAGGGAACAAATACTTCCGTCATGCTAC
TGGGCAGATATACGCGATTTCAAAAGACCTCGCGACCTACATTTCAATCAACCAGCCTATCTTACACAAATTTGCGAACG
AAGATGTATCACTTGGTTCATGGTTTATTGGTTTAGAAGTGAATCATATCGATGAAAGAAACATGTGCTGCGGGACTCCA
CCAGATTGCGAGTGGAAAGGACAAGCTGGCAATGTCTGTGTGGCGTCTTTCGATTGGAGCTGCAGCGGCATATGCAAGTC
GGTCGAGAGGATCAAGGAAGTACATGCTCGATGCGGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis