Browse Element(s) Details


Os.25507.1.S1_at

Description gb:AK066852.1
DB_XREF= gi:32976870
TID=Os.25507.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013077B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013077B21, full insert sequence.
FL= gb:AK066852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1567010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15640Os.44215.1.S1_at10/117+9070161..9076095pentatricopeptide, putative, expressed
LOC_Os07g15650OsAffx.22393.1.S1_at5/117+9079729..9080546hypothetical protein
LOC_Os07g15660OsAffx.10155.1.S1_x_at11/117+9089056..9093538retrotransposon protein, putative, LINE subclass
LOC_Os07g15660OsAffx.10155.1.S1_at11/117+9089056..9093538retrotransposon protein, putative, LINE subclass
LOC_Os07g15670Os.25507.1.S1_at10/117+9097402..9101211expressed protein
LOC_Os07g15680Os.5744.1.S1_at11/117+9103800..9111224Phospholipase D beta 1, putative, expressed
LOC_Os07g15690OsAffx.22421.3.S1_at11/117+9115421..9118253transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15690OsAffx.22421.2.S1_at2/117+9115421..9118253transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15700Os.46610.1.A1_x_at11/117+9123209..9123736hypothetical protein
LOC_Os07g15710Os.27435.1.S1_x_at3/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.51856.1.S2_at2/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.46334.1.S1_at2/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.51856.1.S2_x_at2/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.46334.1.S1_x_at1/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710OsAffx.22896.1.S1_x_at1/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710OsAffx.940.1.S1_x_at1/117+9125935..9130100transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25507.1.S1_at--73--9991Chr07:9100434..9100458 (25 bp)
TACCATGGGCAGTTTGACGATTCAA
LOC_Os07g15670
Os.25507.1.S1_at--5--3231NONE
CAACGTGCCAGTTACCGGAAGGGAT
NONE
Os.25507.1.S1_at--745--4631Chr07:9100576..9100600 (25 bp)
GCGATTGATTGTGCACTTAGTGGAC
LOC_Os07g15670
Os.25507.1.S1_at--578--3231Chr07:9100600..9100624 (25 bp)
CAAGAGCTACCTTTTGTGCCAAAAC
LOC_Os07g15670
Os.25507.1.S1_at--955--4171Chr07:9100722..9100743 (22 bp)
CCCAGTGTCGGGTGCAGCATCAAAT
LOC_Os07g15670
Os.25507.1.S1_at--767--2951Chr07:9100741..9100765 (25 bp)
AATGGCACCCATGAAGAGCGTATTG
LOC_Os07g15670
Os.25507.1.S1_at--108--4651Chr07:9100758..9100782 (25 bp)
GCGTATTGCATTGTCATGTGCTGGA
LOC_Os07g15670
Os.25507.1.S1_at--43--8931Chr07:9100833..9100857 (25 bp)
TGAGCCATGCTCTCTACTACTAGAA
LOC_Os07g15670
Os.25507.1.S1_at--411--8431Chr07:9100962..9100986 (25 bp)
GGCCTTGTGGAGCTGATTCTTAACG
LOC_Os07g15670
Os.25507.1.S1_at--349--8791Chr07:9101043..9101067 (25 bp)
TGTTATGTTGTGTGCTGGTGTCTCA
LOC_Os07g15670
Os.25507.1.S1_at--1120--9111Chr07:9101055..9101079 (25 bp)
TGCTGGTGTCTCATCTTGGCCGGAA
LOC_Os07g15670
Target Sequence 
TACCATGGGCAGTTTGACGATTCAAGACCGAGTAACAACGTGCCAGTTACCGGAAGGGATTTAAGTCGTGCGATTGATTG
TGCACTTAGTGGACAAGAGCTACCTTTTGTGCCAAAACCCAGTGTCGGGTGCAGCATCAAATGGCACCCATGAAGAGCGT
ATTGCATTGTCATGTGCTGGAATATAGATGTTTTTCCCCCTTAAATTGAAGGTTGAACATGGGGATTGAGGTGAGCCATG
CTCTCTACTACTAGAAGTATGGAAGCACACACATAGTAGATTTATGATAGCTAATTTCACATAGTAGATTTATGATAGCT
AATTTATAATGTAATTTTTAAGGGAAATAGATGCAGTTGAGGCCTTGTGGAGCTGATTCTTAACGTTGTGGGGGCTGTTC
AACTTGAGAGTTGCAAAACTAGACATGAATGGCGTGGATAGTGTTATGTTGTGTGCTGGTGTCTCATCTTGGCCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis