Browse Element(s) Details


OsAffx.22393.1.S1_at

Description gb:NM_186937.1
DB_XREF= gi:34900959
GEN=OJ1370_E02.21
TID=OsAffx.22393.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1370_E02.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g156505/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15620OsAffx.22492.1.S1_at1/117+9054773..9060601retrotransposon protein, putative, unclassified
LOC_Os07g15620OsAffx.22492.1.S1_x_at1/117+9054773..9060601retrotransposon protein, putative, unclassified
LOC_Os07g15630Os.31312.5.S1_x_at4/117+9061231..9064519retrotransposon protein, putative, unclassified
LOC_Os07g15630Os.31312.2.S1_x_at4/117+9061231..9064519retrotransposon protein, putative, unclassified
LOC_Os07g15640Os.44215.1.S1_at10/117+9070161..9076095pentatricopeptide, putative, expressed
LOC_Os07g15650OsAffx.22393.1.S1_at5/117+9079729..9080546hypothetical protein
LOC_Os07g15660OsAffx.10155.1.S1_x_at11/117+9089056..9093538retrotransposon protein, putative, LINE subclass
LOC_Os07g15660OsAffx.10155.1.S1_at11/117+9089056..9093538retrotransposon protein, putative, LINE subclass
LOC_Os07g15670Os.25507.1.S1_at10/117+9097402..9101211expressed protein
LOC_Os07g15680Os.5744.1.S1_at11/117+9103800..9111224Phospholipase D beta 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22393.1.S1_at--699--7491Chr07:9079893..9079917 (25 bp)
GTGGTGGCAGGCTACAACTGCTACA
LOC_Os07g15650
OsAffx.22393.1.S1_at--451--1751Chr07:9079864..9079888 (25 bp)
ACCTAGCCTATTGGATCCCATGGAG
LOC_Os07g15650
OsAffx.22393.1.S1_at--813--2791Chr07:9079818..9079842 (25 bp)
AAGATGAGCCACCTTCAAGTAATCA
LOC_Os07g15650
OsAffx.22393.1.S1_at--263--2851Chr07:9079802..9079826 (25 bp)
AAGTAATCATGTCCCTGGCTACGCT
LOC_Os07g15650
OsAffx.22393.1.S1_at--1032--3371Chr07:9079744..9079768 (25 bp)
CAGCCACTCATCTTCTGGTGAAAGT
LOC_Os07g15650
OsAffx.22393.1.S1_at--495--8111Chr07:9077108..9077132 (25 bp)
GGACGATGTTACTGTGGCAGCCTTC
NONE
OsAffx.22393.1.S1_at--345--6751Chr07:9077054..9077078 (25 bp)
GTTCAGCACTGCGAAGCCGAAGGCG
NONE
OsAffx.22393.1.S1_at--285--2631Chr07:9076990..9077014 (25 bp)
AACCGGCCAGAGTTGCATTGCGAGA
NONE
OsAffx.22393.1.S1_at--679--9751Chr07:9076946..9076970 (25 bp)
TAATGAATGGGTTCCGGCGTGCTTT
NONE
OsAffx.22393.1.S1_at--464--8911Chr07:9076886..9076910 (25 bp)
TGACGTCGGGCAGCACTCCAACAAG
NONE
OsAffx.22393.1.S1_at--631--5171Chr07:9076724..9076748 (25 bp)
GCAATCATGCCGAGCAGCCATCAAT
NONE
Target Sequence 
GTGGTGGCAGGCTACAACTGCTACACCCCACCTAGCCTATTGGATCCCATGGAGAGGAGAGAAGGAAGGGAGAAGAAGAT
GAGCCACCTTCAAGTAATCATGTCCCTGGCTACGCTCTTTGGAGGCTGCCGCTTCATCGGGCATCGAGCCAGCCACTCAT
CTTCTGGTGAAAGTGGTGGGTACAGCTTGATAGTGAAAGACGGCGATGAGGACGATGTTACTGTGGCAGCCTTCGGGCGA
TTGGAGAGCGAGGTTGAAGTGGAGTTCAGCACTGCGAAGCCGAAGGCGGTGGCGGTTCAGCCGGGCAACGCTCTGGCGAG
AAGAAACAACCGGCCAGAGTTGCATTGCGAGATAGAGGAGGAAGGCGGCGATAATGAATGGGTTCCGGCGTGCTTTGGGC
GAAGCCGAGGGGTGGCCGGGGAAGGAGATGGTGACGTCGGGCAGCACTCCAACAAGGCAAAGGAGGGAGATCCGGTGATG
GAAAGTGCGGATTGGCAGTGGCAATCATGCCGAGCAGCCATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis