Browse Element(s) Details


Os.44215.1.S1_at

Description gb:CB097056
DB_XREF= gi:27921248
DB_XREF=AF53-Rpf_11_L22_T7_093.ab1
CLONE=C0004126
TID=Os.44215.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) selenium-binding protein-like (OJ1370_E02.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1564010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15610OsAffx.10156.1.S1_x_at11/117+9045841..9046369hypothetical protein
LOC_Os07g15620OsAffx.22492.1.S1_at1/117+9054773..9060601retrotransposon protein, putative, unclassified
LOC_Os07g15620OsAffx.22492.1.S1_x_at1/117+9054773..9060601retrotransposon protein, putative, unclassified
LOC_Os07g15630Os.31312.5.S1_x_at4/117+9061231..9064519retrotransposon protein, putative, unclassified
LOC_Os07g15630Os.31312.2.S1_x_at4/117+9061231..9064519retrotransposon protein, putative, unclassified
LOC_Os07g15640Os.44215.1.S1_at10/117+9070161..9076095pentatricopeptide, putative, expressed
LOC_Os07g15650OsAffx.22393.1.S1_at5/117+9079729..9080546hypothetical protein
LOC_Os07g15660OsAffx.10155.1.S1_x_at11/117+9089056..9093538retrotransposon protein, putative, LINE subclass
LOC_Os07g15660OsAffx.10155.1.S1_at11/117+9089056..9093538retrotransposon protein, putative, LINE subclass
LOC_Os07g15670Os.25507.1.S1_at10/117+9097402..9101211expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006381biological_processmRNA editing
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44215.1.S1_at--944--6251Chr07:9074388..9074412 (25 bp)
GATGGTGTGATCGATGCACGCACAA
LOC_Os07g15640
Os.44215.1.S1_at--250--5571Chr07:9074341..9074365 (25 bp)
GAAAGTGCCTGGAAGTAGCTCAATC
LOC_Os07g15640
Os.44215.1.S1_at--759--6951Chr07:9074327..9074351 (25 bp)
GTAGCTCAATCCAGGTAGGCAGTGA
LOC_Os07g15640
Os.44215.1.S1_at--962--2111Chr07:9074244..9074268 (25 bp)
ACAGTTGACGGTTTAATGGCCCTCA
LOC_Os07g15640
Os.44215.1.S1_at--864--871Chr07:9074229..9074253 (25 bp)
ATGGCCCTCATGAGACATACAGAGC
LOC_Os07g15640
Os.44215.1.S1_at--569--4891Chr07:9074159..9074183 (25 bp)
GCTTAGTTGAGTGTTGCTCGTCCTA
LOC_Os07g15640
Os.44215.1.S1_at--128--6671Chr07:9074147..9074171 (25 bp)
GTTGCTCGTCCTACATGTGCAAAAT
LOC_Os07g15640
Os.44215.1.S1_at--139--3151Chr07:9073974..9073998 (25 bp)
AATTGCACACCGCTTAACTATTGAA
LOC_Os07g15640
Os.44215.1.S1_at--180--71Chr07:9073955..9073979 (25 bp)
ATTGAAGATCTTGCCTGCTTGTCTG
LOC_Os07g15640
Os.44215.1.S1_at--231--6051NONE
GAGTTGGGACCCTATGACCTTATGT
NONE
Os.44215.1.S1_at--750--10431Chr07:9073883..9073907 (25 bp)
TTATGTCCTTGAGTCCTTGTGGCAG
LOC_Os07g15640
Target Sequence 
GATGGTGTGATCGATGCACGCACAAGCATGCGTAATTGGGGAATTGAGAAAGTGCCTGGAAGTAGCTCAATCCAGGTAGG
CAGTGAGGTTCATGAGTTTTTGGCTAAAGATACNAGGCATAAGAGGAGGAAAGAGATATATGAAACAGTTGACGGTTTAA
TGGCCCTCATGAGACATACAGAGCAAGCACATTGGNTNANNTNNNNNNGNNNACTGCAGCATCAGAAGTGCTTAGTTGAG
TGTTGCTCGTCCTACATGTGCAAAATAAATACTAGATTACCATTTGAACAGGATGGACTGGTAAGTTGTATAGCAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGCAGTTGATGATTTGATTGAATGCATGAATCATA
GAGGACACCCCCTTTGATTGCTTAAAGAAATTGCACACCGCTTAACTATTGAAGATCTTGCCTGCTTGTCTGTCTTGTGC
AGCTCATGTGTAAAGGTTGAGAGTTGGGACCCTATGACCTTATGTCCTTGAGTCCTTGTGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis