Browse Element(s) Details


OsAffx.10156.1.S1_x_at

Description tigr:9635.m01554
TID=OsAffx.10156.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1561011/11hypothetical protein
LOC_Os11g281842/11expressed protein
LOC_Os11g207801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15570OsAffx.28463.1.S1_at11/117+9020589..9023862PPR986-12, putative, expressed
LOC_Os07g15580OsAffx.1430.2.A1_at11/117+9026189..9027824hypothetical protein
LOC_Os07g15580Os.55234.1.S1_s_at1/117+9026189..9027824hypothetical protein
LOC_Os07g15590OsAffx.22394.2.S1_at10/117+9030075..9032765hypothetical protein
LOC_Os07g15590OsAffx.22394.1.S1_at7/117+9030075..9032765hypothetical protein
LOC_Os07g15600Os.6091.1.A1_at11/117+9034315..9037530f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os07g15610OsAffx.10156.1.S1_x_at11/117+9045841..9046369hypothetical protein
LOC_Os07g15620OsAffx.22492.1.S1_at1/117+9054773..9060601retrotransposon protein, putative, unclassified
LOC_Os07g15620OsAffx.22492.1.S1_x_at1/117+9054773..9060601retrotransposon protein, putative, unclassified
LOC_Os07g15630Os.31312.5.S1_x_at4/117+9061231..9064519retrotransposon protein, putative, unclassified
LOC_Os07g15630Os.31312.2.S1_x_at4/117+9061231..9064519retrotransposon protein, putative, unclassified
LOC_Os07g15640Os.44215.1.S1_at10/117+9070161..9076095pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10156.1.S1_x_at--1062--6231Chr07:9046030..9046051 (22 bp)
GATGGTGACAAACTATCTAAGTCGA
LOC_Os07g15610
OsAffx.10156.1.S1_x_at--226--5631Chr07:9046024..9046048 (25 bp)
GACAAACTATCTAAGTCGAGAAGAA
LOC_Os07g15610
OsAffx.10156.1.S1_x_at--341--6175Chr11:15705111..15705135 (25 bp)
GAGGAGAATCAAACTCGTATCCGAA
LOC_Os11g28184
OsAffx.10156.1.S1_x_at--988--52313Chr11:15705116..15705140 (25 bp)
GAATCAAACTCGTATCCGAACTTAT
LOC_Os11g28184
OsAffx.10156.1.S1_x_at--1024--9952Chr11:12001767..12002272 (25 bp)
TATCCGAACTTATAGAGTTTTGGAC
LOC_Os11g20780
OsAffx.10156.1.S1_x_at--238--3115Chr09:3067171..3067192 (22 bp)
CAATTAAACACCTTCAAATGGGACA
NONE
OsAffx.10156.1.S1_x_at--577--2131Chr07:9045926..9045950 (25 bp)
ACACCTTCAAATGGGACAAACATCC
LOC_Os07g15610
OsAffx.10156.1.S1_x_at--1145--8131Chr07:9045913..9045937 (25 bp)
GGACAAACATCCATACCAATATAAT
LOC_Os07g15610
OsAffx.10156.1.S1_x_at--384--8411Chr07:9045884..9045908 (25 bp)
GGCCCGAAATGAGTGTCCAGGCGAA
LOC_Os07g15610
OsAffx.10156.1.S1_x_at--133--1112Chr03:16373395..16373417 (22 bp)
AGTGTCCAGGCGAAAACCGGAGCCA
NONE
OsAffx.10156.1.S1_x_at--236--8711Chr07:9045871..9045895 (25 bp)
TGTCCAGGCGAAAACCGGAGCCAAA
LOC_Os07g15610
Target Sequence 
GATGGTGACAAACTATCTAAGTCGAGAAGAAATATACAAGAAGGAGGAGGAGAATCAAACTCGTATCCGAACTTATAGAG
TTTTGGACCCAAAAACCCAATTAAACACCTTCAAATGGGACAAACATCCATACCAATATAATGAGGGGCCCGAAATGAGT
GTCCAGGCGAAAACCGGAGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10156.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis