Browse Element(s) Details


OsAffx.1430.2.A1_at

Description tigr:9635.m01551
TID=OsAffx.1430.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1558011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15530Os.10688.1.S1_at2/117+9002297..9002524expressed protein
LOC_Os07g15540Os.29967.1.S1_at11/117+9003509..9006804GAF domain containing protein, expressed
LOC_Os07g15550NANA7+9011871..9013223hypothetical protein
LOC_Os07g15560OsAffx.28462.1.S1_at11/117+9015235..9016752retrotransposon protein, putative, unclassified
LOC_Os07g15570OsAffx.28463.1.S1_at11/117+9020589..9023862PPR986-12, putative, expressed
LOC_Os07g15580OsAffx.1430.2.A1_at11/117+9026189..9027824hypothetical protein
LOC_Os07g15580Os.55234.1.S1_s_at1/117+9026189..9027824hypothetical protein
LOC_Os07g15590OsAffx.22394.2.S1_at10/117+9030075..9032765hypothetical protein
LOC_Os07g15590OsAffx.22394.1.S1_at7/117+9030075..9032765hypothetical protein
LOC_Os07g15600Os.6091.1.A1_at11/117+9034315..9037530f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os07g15610OsAffx.10156.1.S1_x_at11/117+9045841..9046369hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1430.2.A1_at--959--7931Chr07:9026764..9026788 (25 bp)
GGATGATTGGAACAAGCCTTTGGTT
LOC_Os07g15580
OsAffx.1430.2.A1_at--340--3691Chr07:9026747..9026771 (25 bp)
CTTTGGTTGCGGATGTGTCATGGCC
LOC_Os07g15580
OsAffx.1430.2.A1_at--670--7451Chr07:9026733..9026757 (25 bp)
GTGTCATGGCCAATTTTGTCAATTA
LOC_Os07g15580
OsAffx.1430.2.A1_at--608--10251Chr07:9026719..9026743 (25 bp)
TTTGTCAATTATGCCGCCACTTTGG
LOC_Os07g15580
OsAffx.1430.2.A1_at--59--611Chr07:9026709..9026733 (25 bp)
ATGCCGCCACTTTGGCACTTTGCTA
LOC_Os07g15580
OsAffx.1430.2.A1_at--978--5091Chr07:9026695..9026719 (25 bp)
GCACTTTGCTACTTCTTTTTGGATT
LOC_Os07g15580
OsAffx.1430.2.A1_at--411--2411Chr07:9026658..9026682 (25 bp)
AAAAGCTCTAATGGGACCTTACATA
LOC_Os07g15580
OsAffx.1430.2.A1_at--959--5971Chr07:9026320..9026344 (25 bp)
GAGAACACACAACTACAGATGATAT
LOC_Os07g15580
OsAffx.1430.2.A1_at--759--2411Chr07:9026254..9026278 (25 bp)
AAAAATGCCAGTGCTATGCGCATAT
LOC_Os07g15580
OsAffx.1430.2.A1_at--559--1131Chr07:9026245..9026269 (25 bp)
AGTGCTATGCGCATATCGGCTACGT
LOC_Os07g15580
OsAffx.1430.2.A1_at--697--471Chr07:9026231..9026255 (25 bp)
ATCGGCTACGTGCTACTGGAATTTA
LOC_Os07g15580
Target Sequence 
GGATGATTGGAACAAGCCTTTGGTTGCGGATGTGTCATGGCCAATTTTGTCAATTATGCCGCCACTTTGGCACTTTGCTA
CTTCTTTTTGGATTTATTTACATTGAAAAAGCTCTAATGGGACCTTACATAAAGTATAGGCTGAAAAAATCAATTGAGAA
CACACAACTACAGATGATATGGGTTAATTGGATCCATGGCAATGCAAATATGCCAATTCAAAAAAATGCCAGTGCTATGC
GCATATCGGCTACGTGCTACTGGAATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1430.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis