Browse Element(s) Details


OsAffx.28462.1.S1_at

Description gb:NM_186926.1
DB_XREF= gi:34900937
GEN=OJ1354_H07.19
TID=OsAffx.28462.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) gagpol polyprotein-like (OJ1354_H07.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1556011/11retrotransposon protein, putative, unclassified
LOC_Os02g187601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15490Os.18530.1.S1_at11/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15490OsAffx.24019.1.S1_at1/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15490OsAffx.24019.1.S1_x_at1/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15500OsAffx.28461.1.S1_at11/117+8992346..8995512OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os07g15510Os.34643.1.S1_at1/117+8996899..8999625retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15520NANA7+9000605..9001033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15530Os.10688.1.S1_at2/117+9002297..9002524expressed protein
LOC_Os07g15540Os.29967.1.S1_at11/117+9003509..9006804GAF domain containing protein, expressed
LOC_Os07g15550NANA7+9011871..9013223hypothetical protein
LOC_Os07g15560OsAffx.28462.1.S1_at11/117+9015235..9016752retrotransposon protein, putative, unclassified
LOC_Os07g15570OsAffx.28463.1.S1_at11/117+9020589..9023862PPR986-12, putative, expressed
LOC_Os07g15580OsAffx.1430.2.A1_at11/117+9026189..9027824hypothetical protein
LOC_Os07g15580Os.55234.1.S1_s_at1/117+9026189..9027824hypothetical protein
LOC_Os07g15590OsAffx.22394.2.S1_at10/117+9030075..9032765hypothetical protein
LOC_Os07g15590OsAffx.22394.1.S1_at7/117+9030075..9032765hypothetical protein
LOC_Os07g15600Os.6091.1.A1_at11/117+9034315..9037530f13j11 PRLI-interacting factor G, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28462.1.S1_at--305--10071Chr07:9016179..9016203 (25 bp)
TAGTCTTGCCGGCACTCTGCAGTAT
LOC_Os07g15560
OsAffx.28462.1.S1_at--523--10491Chr07:9016210..9016234 (25 bp)
TTCACCTGGCCTAACATTTCTTATG
LOC_Os07g15560
OsAffx.28462.1.S1_at--217--591Chr07:9016232..9016256 (25 bp)
ATGCCATACAGCAGGTGTGCCTTCA
LOC_Os07g15560
OsAffx.28462.1.S1_at--613--9911Chr07:9016375..9016399 (25 bp)
TACTCTGACGCTGACTGGGCAGGTT
LOC_Os07g15560
OsAffx.28462.1.S1_at--510--5012Chr07:9016393..9016417 (25 bp)
GCAGGTTGTCCCGACACCAGAAAAT
LOC_Os07g15560
OsAffx.28462.1.S1_at--338--331Chr07:9016411..9016435 (25 bp)
AGAAAATCCACCTCGGGTTACGCTG
LOC_Os07g15560
OsAffx.28462.1.S1_at--870--8611Chr07:9016443..9016467 (25 bp)
TGGTGACAACCTTGTCTCATGGTCC
LOC_Os07g15560
OsAffx.28462.1.S1_at--79--8671Chr07:9016533..9016557 (25 bp)
TGTGGCTGAGACTACCTGGCTTCAA
LOC_Os07g15560
OsAffx.28462.1.S1_at--44--6091Chr07:9016587..9016611 (25 bp)
GAGTCATTCTACACTGGTCTACTGC
LOC_Os07g15560
OsAffx.28462.1.S1_at--192--10351Chr07:9016628..9016652 (25 bp)
TTTATCTCTCTACTAACCCGGTGCA
LOC_Os07g15560
OsAffx.28462.1.S1_at--155--8054Chr07:9016674..9016698 (25 bp)
GGAGATTGATCTACACTTTGTTCGT
LOC_Os07g15560
Target Sequence 
TAGTCTTGCCGGCACTCTGCAGTATCTGACCTTCACCTGGCCTAACATTTCTTATGCCATACAGCAGGTGTGCCTTCACA
TGCATGACCCGCGGGAGCCGCATCTTGCCGCTCTAAAGCGCATCTTGCGCTATCTCCGCGGCACTCCTGACCTCGGTCTC
CACATTCGGCGTTCCACTCCGGTCGATCTCACCGCCTACTCTGACGCTGACTGGGCAGGTTGTCCCGACACCAGAAAATC
CACCTCGGGTTACGCTGTTTTCCTTGGTGACAACCTTGTCTCATGGTCCTCGAAGCGCCAGCACACCGTGTCCTGCTCCA
GTGCTGAGGCGGAATACCGGGCGGTGGCCAACGCTGTGGCTGAGACTACCTGGCTTCAACAGCTTCTTCATGAGCTCCAT
ACCCCTCCGAGTCATTCTACACTGGTCTACTGCGACAATGTGAGTGTTGTTTATCTCTCTACTAACCCGGTGCAGCATCA
GCGCACTAAACATGTGGAGATTGATCTACACTTTGTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis