Browse Element(s) Details


OsAffx.24019.1.S1_at

Description tigr:9629.m07214
TID=OsAffx.24019.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DNA mismatch repair protein MutL, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g222841/11ABC-2 type transporter family protein, expressed
LOC_Os12g376001/11Acyltransferase family protein
LOC_Os07g154901/11BTB/POZ domain containing protein, expressed
LOC_Os05g422501/11cation channel family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22260OsAffx.29731.3.S1_at1/1112+12543726..12547378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g22270OsAffx.7656.3.A1_x_at11/1112+12553636..12554085hypothetical protein
LOC_Os12g22270OsAffx.7656.2.S1_x_at1/1112+12553636..12554085hypothetical protein
LOC_Os12g22284Os.14657.1.S1_at11/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284Os.49307.1.S1_at11/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284Os.47130.4.A1_x_at2/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284Os.37083.2.S1_at1/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284OsAffx.24019.1.S1_at1/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284OsAffx.24019.1.S1_x_at1/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284Os.53962.1.S1_at1/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22300OsAffx.25260.1.S1_at1/1112+12586563..12589901transposon protein, putative, unclassified
LOC_Os12g22300OsAffx.30486.1.S1_at1/1112+12586563..12589901transposon protein, putative, unclassified
LOC_Os12g22310Os.2987.3.S1_x_at1/1112+12593768..12596161retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g22320OsAffx.22699.1.S1_x_at2/1112+12598805..12605605retrotransposon protein, putative, unclassified
LOC_Os12g22320Os.45161.1.A1_x_at1/1112+12598805..12605605retrotransposon protein, putative, unclassified
LOC_Os12g22330OsAffx.3761.1.S1_x_at1/1112+12606131..12609233hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008152biological_processmetabolism
GO:0009626biological_processhypersensitive response
GO:0010025biological_processwax biosynthesis
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0005216molecular_functionion channel activity
GO:0005221molecular_functionintracellular cyclic nucleotide activated cation channel activity
GO:0005222molecular_functionintracellular cAMP activated cation channel activity
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005261molecular_functioncation channel activity
GO:0005515molecular_functionprotein binding
GO:0005516molecular_functioncalmodulin binding
GO:0008324molecular_functioncation transporter activity
GO:0008415molecular_functionacyltransferase activity
GO:0030551molecular_functioncyclic nucleotide binding
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24019.1.S1_at--502--1511NONE
AGCAGCGCAGGGAACTCCTTCACCT
NONE
OsAffx.24019.1.S1_at--376--1611NONE
AGCGCAGGGAACTCCTTCACCTAGG
NONE
OsAffx.24019.1.S1_at--339--4131NONE
CGCAGGGAACTCCTTCACCTAGGAG
NONE
OsAffx.24019.1.S1_at--1146--3111NONE
AATTTCTCCTCGAACGCATCGTAGA
NONE
OsAffx.24019.1.S1_at--288--191NONE
ATTTCTCCTCGAACGCATCGTAGAG
NONE
OsAffx.24019.1.S1_at--705--10271NONE
TTTCTCCTCGAACGCATCGTAGAGG
NONE
OsAffx.24019.1.S1_at--156--3811NONE
CTCCTCGAACGCATCGTAGAGGAAG
NONE
OsAffx.24019.1.S1_at--1127--10591Chr01:42607091..42607520 (25 bp)
TTGCGTTCCTGGCAGAAGACTACCG
NONE
OsAffx.24019.1.S1_at--756--4031Chr01:42607094..42607523 (25 bp)
CGTTCCTGGCAGAAGACTACCGCAC
NONE
OsAffx.24019.1.S1_at--790--8333Chr05:24630326..24630346 (21 bp)
GGCTGTGTTCGGAAGGTGAGGTTGG
LOC_Os05g42250
OsAffx.24019.1.S1_at--1033--73714Chr12:22683613..22683637 (25 bp)
GTGAGGTTGGGAACTCACCTCCCGC
NONE
Target Sequence 
AGCAGCGCAGGGAACTCCTTCACCTAGGAGGCTTCGTGGAAGCCCATCACCACGCAGACGCTCCCCTGGGCCCATTAGAC
GGCGGTCACCACCACCACCCCCAAGGCGGCCAAGAAGCCCTCCTGGAAGAAGGCTACCACCTCCACGTCGTCATAGCCGT
TCTCCCCCGCCTCGTCGTCCCCCTCATTCACGTTCCAGATCAATTTCTCCTCGAACGCATCGTAGAGGAAGAAGCATCTC
TAGCGACAGCCGGAGCAGCAGCTCACCTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCGTTCCTGGCAGAAGACTAC
CGCACACGCAAGCGGCTGTGTTCGGAAGGTGAGGTTGGGAACTCACCTCCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis