Browse Element(s) Details


Os.49307.1.S1_at

Description gb:AK067639.1
DB_XREF= gi:32977657
TID=Os.49307.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-037-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108J11, full insert sequence.
FL= gb:AK067639.1 gb:AK104709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2228411/11ABC-2 type transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22260OsAffx.29731.3.S1_at1/1112+12543726..12547378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g22270OsAffx.7656.3.A1_x_at11/1112+12553636..12554085hypothetical protein
LOC_Os12g22270OsAffx.7656.2.S1_x_at1/1112+12553636..12554085hypothetical protein
LOC_Os12g22284Os.14657.1.S1_at11/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284Os.49307.1.S1_at11/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284Os.47130.4.A1_x_at2/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284Os.37083.2.S1_at1/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284OsAffx.24019.1.S1_at1/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284OsAffx.24019.1.S1_x_at1/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22284Os.53962.1.S1_at1/1112+12566099..12584343ABC-2 type transporter family protein, expressed
LOC_Os12g22300OsAffx.25260.1.S1_at1/1112+12586563..12589901transposon protein, putative, unclassified
LOC_Os12g22300OsAffx.30486.1.S1_at1/1112+12586563..12589901transposon protein, putative, unclassified
LOC_Os12g22310Os.2987.3.S1_x_at1/1112+12593768..12596161retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g22320OsAffx.22699.1.S1_x_at2/1112+12598805..12605605retrotransposon protein, putative, unclassified
LOC_Os12g22320Os.45161.1.A1_x_at1/1112+12598805..12605605retrotransposon protein, putative, unclassified
LOC_Os12g22330OsAffx.3761.1.S1_x_at1/1112+12606131..12609233hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49307.1.S1_at--525--8631Chr12:12566816..12566840 (25 bp)
TGGGCTATTCAAAGTGGGTAAACCT
LOC_Os12g22284
Os.49307.1.S1_at--273--7051Chr12:12566799..12566823 (25 bp)
GTAAACCTTGCTATCCTGTTTGGGA
LOC_Os12g22284
Os.49307.1.S1_at--886--991Chr12:12566760..12566784 (25 bp)
AGGATGATATTCTTCGTTATTGTCA
LOC_Os12g22284
Os.49307.1.S1_at--250--3231Chr12:12566737..12566761 (25 bp)
CAAGATTGCAGAGGAGCTCAGGCTA
LOC_Os12g22284
Os.49307.1.S1_at--1125--8291Chr12:12566687..12566711 (25 bp)
GGCTTAAATAGTCGTCTTCTCTCTT
LOC_Os12g22284
Os.49307.1.S1_at--1097--10571Chr12:12566671..12566695 (25 bp)
TTCTCTCTTGGAAAACCCGGCCAGG
LOC_Os12g22284
Os.49307.1.S1_at--1102--8111Chr12:12566588..12566612 (25 bp)
GGACTTATGTCATTTGAGCTTGATA
LOC_Os12g22284
Os.49307.1.S1_at--803--5911Chr12:12566573..12566597 (25 bp)
GAGCTTGATAATTCCTAACGGGTAT
LOC_Os12g22284
Os.49307.1.S1_at--534--7851Chr12:12566553..12566577 (25 bp)
GGTATTTTCTGGCATTTTAGTCCTT
LOC_Os12g22284
Os.49307.1.S1_at--187--8291Chr12:12566543..12566567 (25 bp)
GGCATTTTAGTCCTTTGCCAATGGA
LOC_Os12g22284
Os.49307.1.S1_at--853--7411Chr12:12566459..12566483 (25 bp)
GTGTTAAAGGGCTAACATTGCTCCT
LOC_Os12g22284
Target Sequence 
TGGGCTATTCAAAGTGGGTAAACCTTGCTATCCTGTTTGGGATGATGGTGACATACAGGATGATATTCTTCGTTATTGTC
AAGATTGCAGAGGAGCTCAGGCTAAAACTGAGAGGGATTAGATTTAGACGGCTTAAATAGTCGTCTTCTCTCTTGGAAAA
CCCGGCCAGGAGGAAGGGATCATTAAACACAAATAAAATTTGAAGTACAGAATGTACTACAGTAGTGTGGACTTATGTCA
TTTGAGCTTGATAATTCCTAACGGGTATTTTCTGGCATTTTAGTCCTTTGCCAATGGAACAAAATTGTAAAGGATTTTTT
AAGGTAAACCAAGTTATCGTGAACGGTTCGTTGCACAGTGTTAAAGGGCTAACATTGCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis