Browse Element(s) Details


Os.6091.1.A1_at

Description gb:AK067947.1
DB_XREF= gi:32977965
TID=Os.6091.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6091 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative PRLI-interacting factor G (OJ1354_H07.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124I12, full insert sequence.
FL= gb:AK067947.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1560011/11f13j11 PRLI-interacting factor G, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15550NANA7+9011871..9013223hypothetical protein
LOC_Os07g15560OsAffx.28462.1.S1_at11/117+9015235..9016752retrotransposon protein, putative, unclassified
LOC_Os07g15570OsAffx.28463.1.S1_at11/117+9020589..9023862PPR986-12, putative, expressed
LOC_Os07g15580OsAffx.1430.2.A1_at11/117+9026189..9027824hypothetical protein
LOC_Os07g15580Os.55234.1.S1_s_at1/117+9026189..9027824hypothetical protein
LOC_Os07g15590OsAffx.22394.2.S1_at10/117+9030075..9032765hypothetical protein
LOC_Os07g15590OsAffx.22394.1.S1_at7/117+9030075..9032765hypothetical protein
LOC_Os07g15600Os.6091.1.A1_at11/117+9034315..9037530f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os07g15610OsAffx.10156.1.S1_x_at11/117+9045841..9046369hypothetical protein
LOC_Os07g15620OsAffx.22492.1.S1_at1/117+9054773..9060601retrotransposon protein, putative, unclassified
LOC_Os07g15620OsAffx.22492.1.S1_x_at1/117+9054773..9060601retrotransposon protein, putative, unclassified
LOC_Os07g15630Os.31312.5.S1_x_at4/117+9061231..9064519retrotransposon protein, putative, unclassified
LOC_Os07g15630Os.31312.2.S1_x_at4/117+9061231..9064519retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6091.1.A1_at--537--4511Chr07:9034884..9034908 (25 bp)
GCCGAATATCTGCTAGTGTTTTCAT
LOC_Os07g15600
Os.6091.1.A1_at--1148--7411Chr07:9034869..9034893 (25 bp)
GTGTTTTCATCGCACTCGGCAAAGG
LOC_Os07g15600
Os.6091.1.A1_at--970--10571Chr07:9034807..9034831 (25 bp)
TTCTACGGATGGTTCAGCCCGATGT
LOC_Os07g15600
Os.6091.1.A1_at--742--4051Chr07:9034788..9034812 (25 bp)
CGATGTTGCTTGATTTCGGCTGGCT
LOC_Os07g15600
Os.6091.1.A1_at--169--4911Chr07:9034766..9034790 (25 bp)
GCTTCAGCGATGCTCCAAAGGTCTG
LOC_Os07g15600
Os.6091.1.A1_at--784--5051Chr07:9034685..9034709 (25 bp)
GCAGCAGCAGTGTCTATTTGAGGAG
LOC_Os07g15600
Os.6091.1.A1_at--488--6091Chr07:9034630..9034654 (25 bp)
GAGTGCCCGAACCTTACTAGAGCTT
LOC_Os07g15600
Os.6091.1.A1_at--414--5311Chr07:9034590..9034614 (25 bp)
GAAGGTCCTTCGTTAGATCATCGGT
LOC_Os07g15600
Os.6091.1.A1_at--311--6891Chr07:9034535..9034559 (25 bp)
GTATATGCTGTCTGTACCACTTGTA
LOC_Os07g15600
Os.6091.1.A1_at--326--8871Chr07:9034467..9034491 (25 bp)
TGATGTCTACCGTAGTTTAGCCCTT
LOC_Os07g15600
Os.6091.1.A1_at--574--1211Chr07:9034454..9034478 (25 bp)
AGTTTAGCCCTTTCGATTGTATGTG
LOC_Os07g15600
Target Sequence 
GCCGAATATCTGCTAGTGTTTTCATCGCACTCGGCAAAGGAAAAGTTCAGTGCCGTGGAGAGCTGAGGAGCCTCCTCTTC
TACGGATGGTTCAGCCCGATGTTGCTTGATTTCGGCTGGCTTCAGCGATGCTCCAAAGGTCTGGATGTAAGATCTTTGGA
GGAAAATCTAGGACAGGCCCTACTAACCCTCCCACTCAAGCAGCAGCAGTGTCTATTTGAGGAGTGGTTTCAGTGTTTTG
CATCCAAAGGATCNGAGTGCCCGAACCTTACTAGAGCTTTCCAGGTATGGTGGAGAAGGTCCTTCGTTAGATCATCGGTA
GAAGGTCAGTGATAATGTTTTTACTACTAGTATATGCTGTCTGTACCACTTGTAAAATTGCAATTGTTGGAATAACTAGT
AGGGGTGATCAGGTGAATGATGTCTACCGTAGTTTAGCCCTTTCGATTGTATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6091.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis