Browse Element(s) Details


Os.10688.1.S1_at

Description gb:AK106951.1
DB_XREF= gi:32992160
TID=Os.10688.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU078656(E3844)~unknown protein (OJ1354_H07.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-E04, full insert sequence.
FL= gb:AK106951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g155302/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15470NANA7+8972971..8978663retrotransposon protein, putative, unclassified
LOC_Os07g15480NANA7+8979594..8981217hypothetical protein
LOC_Os07g15490Os.18530.1.S1_at11/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15490OsAffx.24019.1.S1_at1/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15490OsAffx.24019.1.S1_x_at1/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15500OsAffx.28461.1.S1_at11/117+8992346..8995512OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os07g15510Os.34643.1.S1_at1/117+8996899..8999625retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15520NANA7+9000605..9001033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15530Os.10688.1.S1_at2/117+9002297..9002524expressed protein
LOC_Os07g15540Os.29967.1.S1_at11/117+9003509..9006804GAF domain containing protein, expressed
LOC_Os07g15550NANA7+9011871..9013223hypothetical protein
LOC_Os07g15560OsAffx.28462.1.S1_at11/117+9015235..9016752retrotransposon protein, putative, unclassified
LOC_Os07g15570OsAffx.28463.1.S1_at11/117+9020589..9023862PPR986-12, putative, expressed
LOC_Os07g15580OsAffx.1430.2.A1_at11/117+9026189..9027824hypothetical protein
LOC_Os07g15580Os.55234.1.S1_s_at1/117+9026189..9027824hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10688.1.S1_at--918--7591Chr07:9002533..9002557 (25 bp)
GGGCACCAATTTTCCATGGAGACGA
NONE
Os.10688.1.S1_at--290--7271Chr07:9002327..9002351 (25 bp)
GGGCGTCGCCGTTACCAAGAGGCCA
LOC_Os07g15530
Os.10688.1.S1_at--928--9971Chr07:9002315..9002339 (25 bp)
TACCAAGAGGCCATGCATAGCAAAA
LOC_Os07g15530
Os.10688.1.S1_at--616--371Chr07:9002254..9002278 (25 bp)
ATCACCGACGTACCCAGACGGATGA
NONE
Os.10688.1.S1_at--186--2391Chr07:9002230..9002254 (25 bp)
AAACGGATCGACGTACGTACTGCTT
NONE
Os.10688.1.S1_at--481--9351Chr07:9002223..9002247 (25 bp)
TCGACGTACGTACTGCTTATGGTGT
NONE
Os.10688.1.S1_at--443--3671Chr07:9002208..9002232 (25 bp)
CTTATGGTGTCAGCGTGTTCTTGTT
NONE
Os.10688.1.S1_at--212--10571Chr07:9002125..9002149 (25 bp)
TTCTTCTTCTCATGGCATCGCCTTG
NONE
Os.10688.1.S1_at--74--3551Chr07:9002110..9002134 (25 bp)
CATCGCCTTGGCTTTCTATATATAA
NONE
Os.10688.1.S1_at--45--7091Chr07:9002072..9002096 (25 bp)
GTCACTAATTAATTAACCACCTGGG
NONE
Os.10688.1.S1_at--808--1711Chr07:9002057..9002081 (25 bp)
ACCACCTGGGATATATAGGCCACAT
NONE
Target Sequence 
GGGCACCAATTTTCCATGGAGACGAAGGTGAGGATGAGCTGCAGGTTGGGCACTATGGTGGCCCTGGTGCTGGTGGGCGT
CGTGCTGGCGGCGATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACTCGCCGGCGGCNAAATCGGGCA
CCGGCTACCTCGACTACGGCAACCTCAAGGCGAAGNTGCCTCCACCGGGCGTCGCCGTTACCAAGAGGCCATGCATAGCA
AAAGAGAAATGCCGCGGCTNGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGATGAAACGGATCGACGTAC
GTACTGCTTATGGTGTCAGCGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCGATGGAATTGAAACGTGTGTG
TTCTTGNTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTCTATATATAATGAGGTTTTTAATGTCACTAATTAATTAACC
ACCTGGGATATATAGGCCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis