Browse Element(s) Details


OsAffx.2606.1.S1_at

Description tigr:9630.m01324
TID=OsAffx.2606.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1424011/11hypothetical protein
LOC_Os05g231002/11hypothetical protein
LOC_Os02g140402/11hypothetical protein
LOC_Os05g444502/11transposon protein, putative, unclassified
LOC_Os04g010892/11
LOC_Os06g169502/11hypothetical protein
LOC_Os04g205702/11hypothetical protein
LOC_Os12g259202/11hypothetical protein
LOC_Os07g161101/11hypothetical protein
LOC_Os05g266491/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14210OsAffx.24244.1.S1_at11/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14210Os.50043.1.A1_at1/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14210OsAffx.22711.4.A1_x_at1/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14220OsAffx.21171.5.S1_x_at3/112+7789660..7794499retrotransposon protein, putative, unclassified
LOC_Os02g14220OsAffx.21171.3.S1_x_at1/112+7789660..7794499retrotransposon protein, putative, unclassified
LOC_Os02g14220OsAffx.20729.1.S1_x_at1/112+7789660..7794499retrotransposon protein, putative, unclassified
LOC_Os02g14230OsAffx.12031.1.S1_at9/112+7796193..7798258hypothetical protein
LOC_Os02g14240OsAffx.2606.1.S1_at11/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.17914.1.S1_at2/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.1436.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.8939.1.S1_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.8939.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.17914.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14250OsAffx.30613.1.S1_x_at11/112+7813507..7815858hAT family dimerisation domain containing protein
LOC_Os02g14250OsAffx.30613.3.S1_x_at11/112+7813507..7815858hAT family dimerisation domain containing protein
LOC_Os02g14250OsAffx.30613.3.S1_at11/112+7813507..7815858hAT family dimerisation domain containing protein
LOC_Os02g14260Os.46012.2.S1_x_at2/112+7821443..7825721retrotransposon protein, putative, unclassified
LOC_Os02g14260Os.46012.3.S1_x_at1/112+7821443..7825721retrotransposon protein, putative, unclassified
LOC_Os02g14260Os.27088.1.A1_x_at1/112+7821443..7825721retrotransposon protein, putative, unclassified
LOC_Os02g14270OsAffx.12032.1.S1_at11/112+7826841..7830822hypothetical protein
LOC_Os02g14270OsAffx.29203.1.S1_x_at2/112+7826841..7830822hypothetical protein
LOC_Os02g14270OsAffx.10222.1.S1_x_at2/112+7826841..7830822hypothetical protein
LOC_Os02g14270Os.47111.1.S1_at1/112+7826841..7830822hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2606.1.S1_at--787--4231Chr02:7807998..7808018 (21 bp)
CCGATGAAGATGTCAGTGGTGTCAA
LOC_Os02g14240
OsAffx.2606.1.S1_at--382--5357Chr12:17070090..17070310 (25 bp)
GAAGATGTCAGTGGTGTCAATAGCA
NONE
OsAffx.2606.1.S1_at--999--7111Chr02:7808009..7808518 (25 bp)
GTCAGTGGTGTCAATAGCAGAGTAA
LOC_Os02g14240
OsAffx.2606.1.S1_at--1087--3411Chr02:7808511..7808535 (25 bp)
CAGAGTAATAGCTGATGATGACGAC
LOC_Os02g14240
OsAffx.2606.1.S1_at--739--1871Chr02:7808534..7808558 (25 bp)
ACGAGGTCACCTATCAGCAATTGCG
LOC_Os02g14240
OsAffx.2606.1.S1_at--741--6151Chr02:7808536..7808560 (25 bp)
GAGGTCACCTATCAGCAATTGCGTA
LOC_Os02g14240
OsAffx.2606.1.S1_at--65--7831Chr02:7808538..7808562 (25 bp)
GGTCACCTATCAGCAATTGCGTAGT
LOC_Os02g14240
OsAffx.2606.1.S1_at--1054--14776Chr12:20286539..20286558 (20 bp)
AGCAATTGCGTAGTAGGCCAACCGT
NONE
OsAffx.2606.1.S1_at--451--3154Chr08:1407368..1407390 (23 bp)
AATTGCGTAGTAGGCCAACCGTGAA
NONE
OsAffx.2606.1.S1_at--195--69383Chr12:20286543..20286563 (21 bp)
GTAGTAGGCCAACCGTGAAGATAAT
NONE
OsAffx.2606.1.S1_at--140--8451Chr02:7808564..7808822 (25 bp)
GGCCAACCGTGAAGATAATAGTAGA
LOC_Os02g14240
Target Sequence 
CCGATGAAGATGTCAGTGGTGTCAATAGCAGAGTAATAGCTGATGATGACGACGAGGTCACCTATCAGCAATTGCGTAGT
AGGCCAACCGTGAAGATAATAGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis